PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.218800.1
Common NameCsa_7G069180
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 335aa    MW: 37771.9 Da    PI: 7.1519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.218800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12164211355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +ErrRR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Cucsa.218800.1 164 QDHILAERRRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 211
                     56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17165222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.33E-17166224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-12166215No hitNo description
SMARTSM003531.6E-14167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEKSSMVVFS EMGMEDNGFV NQWHKSSMDD LGLHPLAAAF GENLQHSYDQ SNIDQKASLN  60
HSHNAILGYM KQLKSDGWSS YQTTNHLPNS QVVAYPTVSV SASNYMNQMD FSRPKEEVVC  120
PQSISNLPSD MLISQDSLAH QSHTTKSNRG TRSPSRNSRI PQAQDHILAE RRRREKLSQR  180
FIALSAIVPG LKKMDKASVL GDAIKYLKQL QEKVKILEEQ TRRKDIESVV FVKKSHVFPD  240
GNDTSKEEDE PLPEIEARIC DKNVLIRIHC EKKKDIIEKT IAEIENLHLT IVNSSVMSFG  300
SLALDITIIA QMDNEFCLTL KDLVKNLQST LRSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14165214857Transcription factor MYC2
5gnj_B2e-14165214857Transcription factor MYC2
5gnj_E2e-14165214857Transcription factor MYC2
5gnj_F2e-14165214857Transcription factor MYC2
5gnj_G2e-14165214857Transcription factor MYC2
5gnj_I2e-14165214857Transcription factor MYC2
5gnj_M2e-14165214857Transcription factor MYC2
5gnj_N2e-14165214857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERRRRE
2170175RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658851.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A0A0K7M30.0A0A0A0K7M3_CUCSA; Uncharacterized protein
STRINGXP_004136916.10.0(Cucumis sativus)
STRINGXP_004163905.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-62bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]