PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 344aa MW: 37451.5 Da PI: 9.5706

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.213830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	84	143	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Cucsa.213830.1 84 ETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNK 143 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-33	67	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.4E-33	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.758	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDFSSVPIYL DPPPNWHHQQ SNHHHHPQIS NSNGSPQHQH LLSLPTQQLS SAPSSHVGVG 60 VGVGSIRRGS MADRARMANV PLPETALKCP RCDSTNTKFC YFNNYSLSQP RHFCKSCRRY 120 WTRGGALRNV PVGGGCRRNK KNKTRRSKSP TVAATMAGGN ESQVMNNHSN SPTTTTIPLH 180 SSAENLIGHL QPQHPHLSFM ASLNNFSRFG TSGLGLNFNE IQTQTNIIGN GALLNHHPWR 240 SSQNFPLSGG LETQPGLYPF QISGGDGDEN NTTNSILTPI SRGTHLPPVK IEETQVLNLL 300 KSSNLGINNS ENNQFWSNGS NGWTDLSAIS STSSGHISCD FNH*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDFSSVPIYL DPPPNWHHQQ SNHHHHPQIS NSNGSPQHQH LLSLPTQQLS SAPSSHVGVG  60
VGVGSIRRGS MADRARMANV PLPETALKCP RCDSTNTKFC YFNNYSLSQP RHFCKSCRRY  120
WTRGGALRNV PVGGGCRRNK KNKTRRSKSP TVAATMAGGN ESQVMNNHSN SPTTTTIPLH  180
SSAENLIGHL QPQHPHLSFM ASLNNFSRFG TSGLGLNFNE IQTQTNIIGN GALLNHHPWR  240
SSQNFPLSGG LETQPGLYPF QISGGDGDEN NTTNSILTPI SRGTHLPPVK IEETQVLNLL  300
KSSNLGINNS ENNQFWSNGS NGWTDLSAIS STSSGHISCD FNH*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00407	DAP	Transfer from AT3G55370	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681926	0.0	LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150185.1	0.0	PREDICTED: dof zinc finger protein DOF3.6
TrEMBL	A0A0A0LUU2	0.0	A0A0A0LUU2_CUCSA; Uncharacterized protein
STRING	XP_004150185.1	0.0	(Cucumis sativus)
STRING	XP_004163650.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	3e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.213830.1
Entrez Gene	101218334

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]