PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.213110.1

Common Name

Csa_1G472480

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 311aa MW: 34869.3 Da PI: 6.3922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.213110.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.8	1.9e-15	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Li+a ++ +l+rg+l++++W++v++ + ++ +r+ +qCk++++ ++k+yk ++++ + + + s++p++ +l+ Cucsa.213110.1 24 CWSEDATSTLIDAWGRRFLDLNRGNLRQKDWQDVADSVnslhgLTKKTHRTDVQCKNRIDTVKKKYKTERARVSASHGNFLSSWPFYARLD 114 7************************************9999999*********************99999999999****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-25	22	116	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGDLTDSHTP SSANSRQVPI REDCWSEDAT STLIDAWGRR FLDLNRGNLR QKDWQDVADS 60 VNSLHGLTKK THRTDVQCKN RIDTVKKKYK TERARVSASH GNFLSSWPFY ARLDELIGPT 120 VSMKKPSSPP LALPLPFRKT PPPSAAASSA IVAVSQKRPA VAMEDVSFRR NYSAAAAAAA 180 AVALSEEEEE EEEEEERVSD DDEAEGEGMS RLARAIKRFG EVYERVEAEK VRQMVELEKQ 240 RMQFAKDLEL QRMHMFMETQ VQLERIKRGK KSTPSGLENL FSRFNVASSM TMFGLGMFGE 300 DVSKVFDASL *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657699.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like isoform X2
TrEMBL	A0A0A0LX81	0.0	A0A0A0LX81_CUCSA; Uncharacterized protein
STRING	XP_004171548.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	5e-41	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cucsa.213110.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]