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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.212870.1 |
| Common Name | Csa_1G469740, WRKY6 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
WRKY |
| Protein Properties |
Length: 286aa MW: 31217.4 Da PI: 5.4004 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.212870.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 93.5 | 1.5e-29 | 77 | 135 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver++ dp++++itY+ eHnh+
Cucsa.212870.1 77 SDSWAWRKYGQKPIKGSPYPRAYYRCSSSkGCPARKQVERNRLDPTTLVITYSCEHNHS 135
69*************************998****************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MDDVSFNHNN HHQFYSSDPF EDSDELKPTP DSPPPTSTIT AAATTKKGRR GMKKKIVSVK 60
INGDSPRNSS GSATPPSDSW AWRKYGQKPI KGSPYPRAYY RCSSSKGCPA RKQVERNRLD 120
PTTLVITYSC EHNHSGPVSR NNNNNNNQNN QMVVMKPGSP ETVAVHQEPE VEEKFVEIGG 180
GEESLITADE FSWFGEMETT SSTVLESSIF SGRASTGLVD HSISSDVAML FPMGDDDVDE 240
SLFADLGELP ECSLVFRRGG GRGLPVDEQP AAAQRRITPW CGTTT*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU984011 | 0.0 | GU984011.1 Cucumis sativus WRKY protein (WRKY6) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Ling J, et al.
Genome-wide analysis of WRKY gene family in Cucumis sativus.
BMC Genomics, 2011. 12: p. 471
[PMID:21955985] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Singh V,Roy S,Singh D,Nandi AK
Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
J. Biosci., 2014. 39(1): p. 119-26
[PMID:24499796]
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