PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.212720.3
Common NameCsa_1G467100
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 20659.5 Da    PI: 10.0684
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.212720.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009e-323382150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Cucsa.212720.3 33 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 82
                    79***********************************************8 PP
2K-box97.52e-32103180683
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                        ++ea+++ +qqe+akL+++i nLq+ +RhllGe+++sLs+k+L++Le +Lek++++iRs+Knell+++ie++qk+
  Cucsa.212720.3 103 AMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
                     44599***********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-412584IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3752585IPR002100Transcription factor, MADS-box
CDDcd002652.44E-422695No hitNo description
SuperFamilySSF554553.4E-3326100IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-332747IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002781IPR002100Transcription factor, MADS-box
PfamPF003195.4E-273481IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-334762IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-336283IPR002100Transcription factor, MADS-box
PfamPF014862.6E-23108180IPR002487Transcription factor, K-box
PROSITE profilePS5129713.463111181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSCYEEEDEE SGVVGLRRSS SSSRTGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS  60
VLCDAEVALI VFSSRGRLYE YANNSVRATI SRYKKAYSDP STAMTVSEAN TQFYQQESAK  120
LRAQIGNLQN LNRHLLGESI SSLSVKDLKS LEVKLEKGIS RIRSRKNELL FSEIEYMQKR  180
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-2226105280Myocyte-specific enhancer factor 2B
1tqe_Q2e-2226105280Myocyte-specific enhancer factor 2B
1tqe_R2e-2226105280Myocyte-specific enhancer factor 2B
1tqe_S2e-2226105280Myocyte-specific enhancer factor 2B
6c9l_A2e-2226105280Myocyte-specific enhancer factor 2B
6c9l_B2e-2226105280Myocyte-specific enhancer factor 2B
6c9l_C2e-2226105280Myocyte-specific enhancer factor 2B
6c9l_D2e-2226105280Myocyte-specific enhancer factor 2B
6c9l_E2e-2226105280Myocyte-specific enhancer factor 2B
6c9l_F2e-2226105280Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0223780.0AF022378.1 Cucumis sativus agamous-like putative transcription factor (CAG2) mRNA, complete cds.
GenBankX978010.0X97801.1 C.sativus CUS1 mRNA for put. transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267656.11e-127floral homeotic protein AGAMOUS-like
RefseqXP_011651593.11e-127PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ435852e-90AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLQ434221e-126Q43422_CUCSA; Putative transcription factor
STRINGXP_004147393.11e-126(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.22e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]
  5. Perl-Treves R,Kahana A,Rosenman N,Xiang Y,Silberstein L
    Expression of multiple AGAMOUS-like genes in male and female flowers of cucumber (Cucumis sativus L.).
    Plant Cell Physiol., 1998. 39(7): p. 701-10
    [PMID:9729894]