PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 308aa MW: 34241.2 Da PI: 5.453

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.201200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.1	1.2e-18	228	262	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l Cucsa.201200.1 228 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 262 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.4E-83	3	306	IPR016679	Transcription factor, GATA, plant
SuperFamily	SSF57716	2.47E-14	221	284	No hit	No description
SMART	SM00401	2.2E-16	222	276	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.807	222	258	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.3E-14	226	260	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.98E-14	227	275	No hit	No description
PROSITE pattern	PS00344	0	228	253	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.7E-16	228	262	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MIMECVRLSP QLCFNPQNVV SSDDFFVDQL LDLSDHDEFL QDQTPDDDDD DDKPSVSLSN 60 LVSAQEIHQD SIVSDFPSLP TSELTVPADD LEDLEWLSHF VEDSFSGFSA PFPSPMKSSK 120 EIATSEEQLV EDDGSVSPPE PCFKTPIPAK ARSKRRRTSG RVWCLRSPSL TDSSSCSTTS 180 SSSSSPASPW LIISDRFEPE IPATKKRRRK SPSEKSRITI GAQPPRRCSH CGVQKTPQWR 240 TGPLGAKTLC NACGVRFKSG RLLPEYRPAC SPNFSSELHS NHHRKVLEMR RKKEVTAPDE 300 FLSVEKN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	KKRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN683281	0.0	LN683281.1 Cucumis melo genomic scaffold, unanchored_scaffold01473.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146485.1	0.0	PREDICTED: GATA transcription factor 5-like
Swissprot	Q9FH57	9e-75	GATA5_ARATH; GATA transcription factor 5
TrEMBL	A0A0A0KUP5	0.0	A0A0A0KUP5_CUCSA; GATA transcription factor
STRING	XP_004170070.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1108	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	1e-66	GATA transcription factor 5

Link Out ? help Back to Top
Phytozome	Cucsa.201200.1
Entrez Gene	101221784

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]