PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.199800.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 489aa MW: 54551.5 Da PI: 6.8239

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.199800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.3e-11	182	223	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka+i++Le +L++ ++L Cucsa.199800.1 182 AKTMRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDL 223 6889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.5E-7	179	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.128	181	225	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-8	182	223	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.43E-7	183	225	No hit	No description
CDD	cd14708	3.07E-22	183	234	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.7E-8	184	226	No hit	No description
PROSITE pattern	PS00036	0	186	201	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-31	266	340	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MANQHSATLP NFHGIIHHNP SLPFINPEGS AFDFGELEEA IVLQGVKLGN DEPKSPNFVT 60 GRPAATLEMF PSWPIRFQQT PTLGGGSKSE STDSGSANIN NTLTSKIELE MESESPISRR 120 TCSSNQGLFD QNHHHHLLHL QHLQSEFEDD ALRTEPSSQQ NQSPPKEKRK GGGSTSERQL 180 DAKTMRRLAQ NREAARKSRL RKKAYIQQLE SSRIKLSQLE QDLHRARSQG LFLGACGGVM 240 GGNISSGAAI FDMEYARWLD EDHRLMAELR AALQGHLPDG DLRAIVDSYI SHYDEIFHLK 300 GVAAKSDVFH LITGMWMTPA ERCFLWIGGF RPSKLIEMLV PQIDTLTDQQ ALGICNLQRS 360 SQETEDALYQ GLEQLQHSLI ITIAGTAVVD GINHMALAAG KLSNLEGFIR QADMLRQQTL 420 HQLHRILTVR QAARCFVVIG EYYGRLRALS SLWVSRPRES SCLNDESSCQ TTTELQMIQN 480 SHTHFPNF*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MANQHSATLP NFHGIIHHNP SLPFINPEGS AFDFGELEEA IVLQGVKLGN DEPKSPNFVT  60
GRPAATLEMF PSWPIRFQQT PTLGGGSKSE STDSGSANIN NTLTSKIELE MESESPISRR  120
TCSSNQGLFD QNHHHHLLHL QHLQSEFEDD ALRTEPSSQQ NQSPPKEKRK GGGSTSERQL  180
DAKTMRRLAQ NREAARKSRL RKKAYIQQLE SSRIKLSQLE QDLHRARSQG LFLGACGGVM  240
GGNISSGAAI FDMEYARWLD EDHRLMAELR AALQGHLPDG DLRAIVDSYI SHYDEIFHLK  300
GVAAKSDVFH LITGMWMTPA ERCFLWIGGF RPSKLIEMLV PQIDTLTDQQ ALGICNLQRS  360
SQETEDALYQ GLEQLQHSLI ITIAGTAVVD GINHMALAAG KLSNLEGFIR QADMLRQQTL  420
HQLHRILTVR QAARCFVVIG EYYGRLRALS SLWVSRPRES SCLNDESSCQ TTTELQMIQN  480
SHTHFPNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-122	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-122	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654412.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3CEU5	0.0	A0A1S3CEU5_CUCME; transcription factor HBP-1b(C38)-like
STRING	XP_004139481.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.199800.1

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]