PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.198760.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YB

Protein Properties

Length: 321aa MW: 37045.3 Da PI: 7.9965

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.198760.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	73.4	3.5e-23	11	99	3	91
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c +e+++ti+++ +l al lGf +y++++ + +++r Cucsa.198760.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHR 99 6899**************************************************************************99876666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-38	8	141	IPR009072	Histone-fold
SuperFamily	SSF47113	4.37E-34	12	142	IPR009072	Histone-fold
Pfam	PF00808	3.1E-21	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCSKEEKRTI APEHVLKALE VLGFSEYIAE VYAAYEQHRI ETMQDSLKGG KWSNGAEMTE 120 EEALAEQQRM FAEARARMNG SNTAPKQSEP EQKMRRRWVS RKLLLTLWAT TLLLSAPTSF 180 VRHFLTWIWI WFSLDCLFMN SYGLYLGWLL MRFTLQTVMA LESSSRRHFH WTRKVSNEDE 240 EDSTFNSLES AVEEKQENAK PISQEPEEQQ QVRAQLTRRK LQQLAISRFR SVLTALGRNR 300 NSQHGLRSRV VGTLFGSRRG H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-32	10	135	10	133	Transcription Regulator NC2 beta chain

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	1e-146	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	1e-146	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4766	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	3e-91	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Cucsa.198760.1