PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.198760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YB | ||||||||
Protein Properties | Length: 321aa MW: 37045.3 Da PI: 7.9965 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 73.4 | 3.5e-23 | 11 | 99 | 3 | 91 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c +e+++ti+++ +l al lGf +y++++ + +++r Cucsa.198760.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHR 99 6899**************************************************************************99876666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.8E-38 | 8 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.37E-34 | 12 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-21 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCSKEEKRTI APEHVLKALE VLGFSEYIAE VYAAYEQHRI ETMQDSLKGG KWSNGAEMTE 120 EEALAEQQRM FAEARARMNG SNTAPKQSEP EQKMRRRWVS RKLLLTLWAT TLLLSAPTSF 180 VRHFLTWIWI WFSLDCLFMN SYGLYLGWLL MRFTLQTVMA LESSSRRHFH WTRKVSNEDE 240 EDSTFNSLES AVEEKQENAK PISQEPEEQQ QVRAQLTRRK LQQLAISRFR SVLTALGRNR 300 NSQHGLRSRV VGTLFGSRRG H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-32 | 10 | 135 | 10 | 133 | Transcription Regulator NC2 beta chain |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-146 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-146 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 3e-91 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.198760.1 |