PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.198760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 321aa    MW: 37045.3 Da    PI: 7.9965
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.198760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB73.43.5e-231199391
           NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
                    ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c +e+++ti+++ +l al  lGf +y++++ +  +++r
  Cucsa.198760.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHR 99
                    6899**************************************************************************99876666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.8E-388141IPR009072Histone-fold
SuperFamilySSF471134.37E-3412142IPR009072Histone-fold
PfamPF008083.1E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCSKEEKRTI APEHVLKALE VLGFSEYIAE VYAAYEQHRI ETMQDSLKGG KWSNGAEMTE  120
EEALAEQQRM FAEARARMNG SNTAPKQSEP EQKMRRRWVS RKLLLTLWAT TLLLSAPTSF  180
VRHFLTWIWI WFSLDCLFMN SYGLYLGWLL MRFTLQTVMA LESSSRRHFH WTRKVSNEDE  240
EDSTFNSLES AVEEKQENAK PISQEPEEQQ QVRAQLTRRK LQQLAISRFR SVLTALGRNR  300
NSQHGLRSRV VGTLFGSRRG H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-321013510133Transcription Regulator NC2 beta chain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-146LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-146LN713256.1 Cucumis melo genomic chromosome, chr_2.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.23e-91nuclear factor Y, subunit B13