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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.193290.1 |
Common Name | Csa_5G146310 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
B3 |
Protein Properties |
Length: 400aa MW: 44545.4 Da PI: 7.4737 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.193290.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 99.2 | 2.6e-31 | 57 | 161 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89
f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ +
Cucsa.193290.1 57 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGiGEiGR 151
89***************************9555568889************************************************65599999 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+l++ ++r+
Cucsa.193290.1 152 DRLYIDWRRR 161
9999999997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MNFGVNTLQN HHLQPRNRLD LIMMEPPEAE EEAGGGSNSG NGGRGGGGEV VEREHMFDKV 60 VTPSDVGKLN RLVIPKQHAE RFFPLDSSTN DKGLLLNFED RNGKSWRFRY SYWNSSQSYV 120 MTKGWSRFVK EKRLDAGDIV SFQRGIGEIG RDRLYIDWRR RPELPIHHYP ITTATTAIRP 180 SIVIPSGSGA TAAWGPLVWQ PLGVTTAGYH HQPAAVTPRD HAHLSRNNNN SNNNNNNGNG 240 MCCPYGYGSS SVETTSSGLV YLRTELGGKS SRRVIGTPRL GEDQELELEM DRNYNNYQMQ 300 QEYCSNGGGG ASMVVLQGNY SMENHHHHHK LNSNNNNNYS EEDTPVKKSR LRLFGVNMEM 360 ESPISSPSSD ECDLLLSTNP KTTTSTTQFQ LPSPSIYKV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 1e-68 | 50 | 164 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-68 | 50 | 164 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
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