PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.184420.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 489aa    MW: 53666.2 Da    PI: 5.3015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.184420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.9e-063023351654
                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +N++f  Lr+ +P       +K++ a+iL  +veY+ +L
  Cucsa.184420.1 302 LNDKFIILRSAVPFT-----TKMDNASILGDTVEYLEQL 335
                     7*************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.204286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-4295341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-9301354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-5302340No hitNo description
Gene3DG3DSA:4.10.280.106.5E-10302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDGVVELGST DKVKEDMAFI QHIKSIFIEK ERQCEAQKPA LSELSTSNSA TSLDHYYYKH  60
LFHSTKASNR KELELEDEMD SDSSTSNSSN SNAAEGGGGG GCPCWPSTVA GAVMAGEPSE  120
LVMQLEPSED IRLGSPDDAS NNFFPNLSHS QSPPPELHTN FDYHLPSNTN ATTQLQLPTL  180
GYSSAAVAVM TEDQDTHYTN MLSAILNLNQ NHQSSQWLDS SAVSNITCST QSAFSKWTRH  240
SDGLYCVTAG TASTSQCLLK SILHTIPFLH TKHRCNQHLY KSDDGQSQNG ISQDFLSHPE  300
LLNDKFIILR SAVPFTTKMD NASILGDTVE YLEQLRQKIQ DLEAQNREFQ SSRRISFQEV  360
QRNSLVPRTS LDKRKLRILE GVGDGCARPK MLKLPSPLTS LDTNLQVSII GGDGLLELQC  420
PYKEGLLLDI LLILQGLQIE TTAVRSSVSN GVFIAELRAK VKENTDGKKA SILEVKSAIQ  480
QIIPCVDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140222.20.0PREDICTED: basic helix-loop-helix protein A isoform X1
RefseqXP_011657519.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
TrEMBLA0A0A0KGA80.0A0A0A0KGA8_CUCSA; Uncharacterized protein
TrEMBLA0A1S3BLF60.0A0A1S3BLF6_CUCME; basic helix-loop-helix protein A isoform X1
TrEMBLA0A1S3BM280.0A0A1S3BM28_CUCME; basic helix-loop-helix protein A isoform X2
STRINGXP_004140222.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-32bHLH family protein