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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.183410.3 |
Common Name | Csa_5G077780, LOC101204612 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
ARF |
Protein Properties |
Length: 676aa MW: 75050.4 Da PI: 6.3484 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.183410.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 71 | 1.6e-22 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + +
Cucsa.183410.3 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 218
99****************************964333..4459************************************************..449 PP
EE..EEEEE- CS
B3 89 efelvvkvfr 98
++el+v+v+r
Cucsa.183410.3 219 NGELRVGVRR 228
999*****97 PP
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2 | Auxin_resp | 94 | 2.5e-31 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha+st++ F+v+Y+Pr s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d + W nS+WrsLk
Cucsa.183410.3 254 ASHAISTGTLFSVFYKPR---STFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLK 333
789***************...79**********************************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 676 aa
Download sequence Send
to blast |
MSFSAASNLP SGGPHSGLSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM 60 HQGLEQQMPS FNLPSKILCK VVNVVLRAES DTDEVYAQIT LLPESNQNEV TSPDPPLPEP 120 TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNQWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV 240 ISSHSMHLGV LATASHAIST GTLFSVFYKP RSTFLVSLNK YLEAQNHKLS VGMRFKMRFE 300 GEEVPERSFS GTIVGLGDNA SPGWANSEWR SLKVQWDEPS SILRPDKVSA WELEPLVASN 360 PLSTQPTQRN KRPRPTVLPS SSPDATVLGG WKPTVESSTF SYAEPQRGRD LYSSPKFSTA 420 ASNSLGFNAN SSLGAVSSNN YWCNTNRVEN IMDPSSHGAN REPVEKKQNS RNGCRLFGIQ 480 LLGNSNVDEA SPVSTPKMGG EDRLVPPIDT DFEQHSEPSN IHRSDIPSIS CDADKSCLIS 540 PLESQSRQIR SCTKVHMQGI AVGRAVDLTR FNQYDDLLRK LEEMFDIEGE LCGSLKKWQV 600 VYTDDEDDMM LVGDDPWNEF CSMVRKIFIY TTEEVKRLSP KIKLPLGGEA KLSKPDSDII 660 ANHTEDQSSI VGSDC*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KU323414 | 0.0 | KU323414.1 UNVERIFIED: Trichosanthes dioica clone TdARF_12 auxin response factor 1-like mRNA, partial sequence. |
GenBank | KU323427 | 0.0 | KU323427.1 UNVERIFIED: Trichosanthes dioica clone TdARF_35 auxin response factor 1-like mRNA, partial sequence. |
Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum. Plant J., 2014. 80(6): p. 1014-30 [PMID:25312353] - Marais C, et al.
The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana. J. Exp. Bot., 2015. 66(21): p. 6665-78 [PMID:26208648] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] - Zhang M,Hu X,Zhu M,Xu M,Wang L
Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]
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