PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.181200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 458aa MW: 51404.8 Da PI: 9.0305 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 63 | 83 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Cucsa.181200.1 63 CEICGKGFQRDQNLQLHRRGH 83 *******************88 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00033 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Cucsa.181200.1 139 WKCEKCSKKYAVQSDWKAHSKTC 161 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 60 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.19E-6 | 60 | 83 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.2E-4 | 127 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.19E-6 | 134 | 159 | No hit | No description |
SMART | SM00355 | 140 | 139 | 159 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MSEEQTISSA FICSIPSLGS INNNNNPSVI VKKKRNLPGN PDPEAEVVSL SPKTLMATNR 60 FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRSNGNKEPR KRVYVCPEKS CVHHHPSRAL 120 GDLTGIKKHF CRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTKEYKCDC GTPFSRFESY 180 HKIQSDYLKL YHRSFECMTF FLSNTIHRRD SYVTHRAYCV ALAEETARLN AASTNIANNN 240 NSLADNYINN NNPPQLFFPN YSSNLFKPNE TSPFFFNNNN TPTIPLPFWI PTNPHQINNF 300 HYPTTTTTTA TATTNSDVLS VPSLFSNEEQ QSSHQFMSSS PNMSATLLLQ KAAQIGVTTD 360 HPSSLMESLG LKFSSITDGK ALLSGIYGSM INSNSNNVII PLSEENHHHH HYSAPPAKRM 420 RHTVSEESVN GGEGETRDFL GVGMHTICHP STVNGWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-27 | 135 | 235 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 2e-27 | 135 | 235 | 3 | 71 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144605.2 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q9FFH3 | 1e-125 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A0A0K6P7 | 0.0 | A0A0A0K6P7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144605.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004169268.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4626 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-93 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.181200.1 |
Publications ? help Back to Top | |||
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