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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.175830.1 |
| Common Name | Csa_3G733340, LOC101221128 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
TALE |
| Protein Properties |
Length: 481aa MW: 54330.8 Da PI: 7.4454 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.175830.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.9 | 9.5e-10 | 277 | 314 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
Fe ++yps +++ LAk++gL+ +qV++WF N R +
Cucsa.175830.1 277 FEHflHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVR 314
554459******************************98 PP
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| 2 | BELL | 86.3 | 3.4e-28 | 167 | 231 | 8 | 72 |
BELL 8 kkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
k+ Lls+l+eV+++Ykqy++q+q v+ sFe + glg+a+pY++ A ka+ +hF+cLk+ai +q+
Cucsa.175830.1 167 HKSTLLSMLDEVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQL 231
5899**********************************************************996 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010076 | Biological Process | maintenance of floral meristem identity |
| GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
| GO:0010089 | Biological Process | xylem development |
| GO:0010154 | Biological Process | fruit development |
| GO:0010223 | Biological Process | secondary shoot formation |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048457 | Biological Process | floral whorl morphogenesis |
| GO:0048645 | Biological Process | organ formation |
| GO:0080006 | Biological Process | internode patterning |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MAEGIESYDH VPQQSRRDKL REHPDHHHRS NFLPFYDPSS SDSSNRFQFH HHPFFDPQIQ 60
SPIFPEIHSF PTEPLSLSLS SHPNFLASPI TPPLPLGPFT GYASILKGSR FLKPAHHLLQ 120
DLCDSVHYSS SSSSFIHDPS SDSFPHSPIL DHHYPLPSSS DSSTPPHKST LLSMLDEVYR 180
KYKQYYQQIQ EVMTSFEYIS GLGNAAPYAN QAIKAMYKHF KCLKNAILDQ LQFNKKTHGD 240
YNQRSVQNPG FLDHQPVWRP QRGLPERAVT VLRAWLFEHF LHPYPSDTDK LMLAKQTGLS 300
RSQVSNWFIN ARVRLWKPMV EEIYMLETKQ QQTQKNLHKE DRTTTRVNDH HPSNPLTMEN 360
PSTSTQQIQD TPPKRTRNEP PDMPMGNHDE PLNVSYNLSS HPHVGANVNM AGNNGGVSLT 420
LGLHQNNGIG GFSEPFPVGF PVAATRRFGL GIQGNSDGYV MGGHFSRDVL GGQLLHDFVG 480
*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Khan M, et al.
Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
Plant Physiol., 2015. 169(3): p. 2166-86
[PMID:26417006] - Andrés F, et al.
Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
Plant Physiol., 2015. 169(3): p. 2187-99
[PMID:26417007] - Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
Dev. Cell, 2016. 39(2): p. 198-208
[PMID:27666746] - Sehra B,Franks RG
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
Front Plant Sci, 2017. 8: p. 1712
[PMID:29085379] - Simonini S,Stephenson P,Østergaard L
A molecular framework controlling style morphology in Brassicaceae.
Development, 2018.
[PMID:29440299]
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