PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.173670.1

Common Name

Csa_5G324000, LOC101209310

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 655aa MW: 73735 Da PI: 4.7947

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.173670.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.3e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v Cucsa.173670.1 6 LPPGFRFHPTDEELVAYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+y+grap+g +tdWvmheyrl Cucsa.173670.1 100 S-QSRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	62.249	6	157	IPR003441	NAC domain
Pfam	PF02365	5.1E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDDRECEV ASSGLQDAYA LCRVFKKSAT IAPKIEDNHP YSNMTSSSNH 180 FMNNNSDQSS EPESSNYSMP FDAFQCQSQS QSHMVNKDCN SFDMFGGARE TKWSQFLSQE 240 AFNSAPSFPS YANIPYPPSK VDIALECARL QHRFTMPPLE VEDYPHTGYS NHFKTQQPTN 300 PTMLGGSSNA STDILQEILS VAQASQQLAN QSCSVDATTW NGGLASNNNN NNNVYACSSN 360 DQDFAFMAAK DNGFQDWNSA VTFDVESSWE DPYSKCIDVG NVGDDIAVEN LRWVGMSSKD 420 LDKNCMEDSK LVPIENISNF QIEDHQIQLQ DQSVAINDEM NDFSLAFINE DDPNPNNYDM 480 EGSDNTMANY SSSPSFEVVE EIKVNHGLFI STRQVAETFF HQTIPSETVK VQSLNSNFMA 540 PNFISLHEIT PQKTPSSFFL SGSFLKKPWN NFRRKIISIL ELLLIFIVYS AEEGEGEGKV 600 NSNSGDEGEK LLSEDEECRS KGKKRGALNM IFKKTGIFFS IASLAICTIW ANYI*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDDRECEV ASSGLQDAYA LCRVFKKSAT IAPKIEDNHP YSNMTSSSNH  180
FMNNNSDQSS EPESSNYSMP FDAFQCQSQS QSHMVNKDCN SFDMFGGARE TKWSQFLSQE  240
AFNSAPSFPS YANIPYPPSK VDIALECARL QHRFTMPPLE VEDYPHTGYS NHFKTQQPTN  300
PTMLGGSSNA STDILQEILS VAQASQQLAN QSCSVDATTW NGGLASNNNN NNNVYACSSN  360
DQDFAFMAAK DNGFQDWNSA VTFDVESSWE DPYSKCIDVG NVGDDIAVEN LRWVGMSSKD  420
LDKNCMEDSK LVPIENISNF QIEDHQIQLQ DQSVAINDEM NDFSLAFINE DDPNPNNYDM  480
EGSDNTMANY SSSPSFEVVE EIKVNHGLFI STRQVAETFF HQTIPSETVK VQSLNSNFMA  540
PNFISLHEIT PQKTPSSFFL SGSFLKKPWN NFRRKIISIL ELLLIFIVYS AEEGEGEGKV  600
NSNSGDEGEK LLSEDEECRS KGKKRGALNM IFKKTGIFFS IASLAICTIW ANYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-56	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681894	0.0	LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148915.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	A4VCM0	1e-106	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A0A0KPW3	0.0	A0A0A0KPW3_CUCSA; Uncharacterized protein
STRING	XP_004157040.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-154	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Cucsa.173670.1
Entrez Gene	101209310

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]