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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.173460.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
ARF |
| Protein Properties |
Length: 142aa MW: 15847.5 Da PI: 10.8896 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.173460.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 37.4 | 4.6e-12 | 6 | 53 | 48 | 99 |
EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 48 vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+ + +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+
Cucsa.173460.1 6 FVV--TGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 53
455..8999***************************..8899999****997 PP
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| 2 | Auxin_resp | 77.9 | 2.6e-26 | 78 | 137 | 1 | 59 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl 59
aahaa+t+s F+v+YnPras+seFv+++ k++ka+ ++vsvGmRf+m fete+ss rr+
Cucsa.173460.1 78 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRY 137
79********************************86599*******************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 142 aa
Download sequence Send
to blast |
NMAYLFVVTG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM 60
PSSVLSSDSM HIGLLAAAAH AAATNSCFTV FYNPRASPSE FVIPLTKYVK AVFHTRVSVG 120
MRFRMLFETE ESSVRRYCNF K*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KU323407 | 0.0 | KU323407.1 UNVERIFIED: Trichosanthes dioica clone TdARF_5 auxin response factor 8-like mRNA, partial sequence. |
| GenBank | KU323421 | 0.0 | KU323421.1 UNVERIFIED: Trichosanthes dioica clone TdARF_29 auxin response factor 8-like mRNA, partial sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Qi Y, et al.
OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
New Phytol., 2012. 193(1): p. 109-20
[PMID:21973088] - Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
Arch. Virol., 2012. 157(8): p. 1531-9
[PMID:22592958] - Wang S, et al.
Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
New Phytol., 2014. 201(1): p. 91-103
[PMID:24111723] - Fan J, et al.
Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
J Integr Plant Biol, 2015. 57(6): p. 577-90
[PMID:25319482]
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