PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 346aa MW: 38567.4 Da PI: 9.701

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.172400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	73	132	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg rknkk++ Cucsa.172400.1 73 EATLKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKK 132 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	56	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.348	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAHSSLPIFL DPPNWHQSNQ TSATTTNDDH QDPRQVSAAF LPPPPPTTGH GGGGIRPNSM 60 AYRARLAMIP QSEATLKCPR CDSTNTKFCY FNNYSLSQPR HFCKACRRYW TRGGALRNVP 120 VGGGFRKNKK KKKSNNRSKS PTPSQSQLGN SRTIMSRNCN NIESSNTTRD FSSHPSLQLS 180 SMNIIPSLQQ QFSRNFGDSF VGIHINSSSA TTAREFDQWH CFQQQQQPFL VAGLESPTTT 240 TTAPEYPEIG VNNNNNFGAN SLQQASGLVQ YNNSNNCHQQ QLQNLTQFSR IPLKNEEQNR 300 EQGTMLSNFL RPNDQNNSQF WGSEHQNSWT DHLSALSSSS SSHLL*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAHSSLPIFL DPPNWHQSNQ TSATTTNDDH QDPRQVSAAF LPPPPPTTGH GGGGIRPNSM  60
AYRARLAMIP QSEATLKCPR CDSTNTKFCY FNNYSLSQPR HFCKACRRYW TRGGALRNVP  120
VGGGFRKNKK KKKSNNRSKS PTPSQSQLGN SRTIMSRNCN NIESSNTTRD FSSHPSLQLS  180
SMNIIPSLQQ QFSRNFGDSF VGIHINSSSA TTAREFDQWH CFQQQQQPFL VAGLESPTTT  240
TTAPEYPEIG VNNNNNFGAN SLQQASGLVQ YNNSNNCHQQ QLQNLTQFSR IPLKNEEQNR  300
EQGTMLSNFL RPNDQNNSQF WGSEHQNSWT DHLSALSSSS SSHLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681918	0.0	LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657163.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A0A0KCA9	0.0	A0A0A0KCA9_CUCSA; Uncharacterized protein
STRING	XP_004163230.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24667	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	5e-39	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Cucsa.172400.1
Entrez Gene	101220917

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]