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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.170790.1 |
| Common Name | Csa_1G275920 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
AP2 |
| Protein Properties |
Length: 342aa MW: 38871.2 Da PI: 7.8877 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.170790.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 49.6 | 1e-15 | 22 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g
Cucsa.170790.1 22 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 81
57*******************999955656446*************************98 PP
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| 2 | AP2 | 51.4 | 2.8e-16 | 124 | 175 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
Cucsa.170790.1 124 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDIAAIEYRG 175
89****99**********99966...3.6*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0040008 | Biological Process | regulation of growth |
| GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process |
| GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MKTKTKRTRR SVPRDSPPQR SSIYRGVTRH RWTGRYEAHL WDKNCWNESQ NKKGRQVYLG 60
AYDDEEAAAH AYDLAALKYW GQETILNFPL TTYQKELKEM EGQSREEYIG SLRRKSSGFS 120
RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE EAATAYDIAA IEYRGLNAVT 180
NFDLSRYIKW LKPSNDVVYD NNRILTVDSI LPSPKQELDL GLFPPDQNQS STDSATPEPI 240
ALPPSRRSTT STTTTTSALG LLLQSSKFKE MMEMNSAAEC PSTPSSSEQL ERRRCLFPDD 300
VQTFFACETS GSYCYGEADD AMFSDFNSFV PPPLSHYDFA D*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402]
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