PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.168370.1

Common Name

Csa_2G224260, WRKY10, WRKY9

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 185aa MW: 20490.3 Da PI: 10.3844

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.168370.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.6	2.3e-32	117	176	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 +D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+k Cucsa.168370.1 117 SDDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCLEDPSMLIVTYEGEHNHPK 176 69**********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.1E-17	74	114	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.6E-35	104	176	IPR003657	WRKY domain
PROSITE profile	PS50811	30.986	111	177	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-28	114	176	IPR003657	WRKY domain
SMART	SM00774	7.8E-39	116	176	IPR003657	WRKY domain
Pfam	PF03106	6.7E-28	118	175	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MKHQAEMMFL RNNNGMNLNF DTSNCTLTMS SARSFISSLS MDGSVIGDRS SFHLIGPSTT 60 TTTTSGNSKR KFSARGEEGS LKCGSTSKCH CSKKRKHRVK RSIKVPAISN KLADIPSDDY 120 SWRKYGQKPI KGSPHPRGYY KCSSIRGCPA RKHVERCLED PSMLIVTYEG EHNHPKMSTQ 180 SAHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-22	109	174	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984012	0.0	GU984012.1 Cucumis sativus WRKY protein (WRKY9) mRNA, complete cds.
GenBank	GU984013	0.0	GU984013.1 Cucumis sativus WRKY protein (WRKY10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004154104.1	1e-134	PREDICTED: probable WRKY transcription factor 21 isoform X1
Swissprot	O04336	3e-87	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	E7CEW1	1e-133	E7CEW1_CUCSA; WRKY protein
STRING	XP_004145381.1	1e-134	(Cucumis sativus)
STRING	XP_004167211.1	1e-134	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	5e-88	WRKY DNA-binding protein 21

Link Out ? help Back to Top
Phytozome	Cucsa.168370.1
Entrez Gene	101214847

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Ling J, et al. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics, 2011. 12: p. 471 [PMID:21955985] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]