PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.167440.1

Common Name

Csa_1G542450, LOC101220022

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 309aa MW: 34306.4 Da PI: 4.5304

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.167440.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	2e-07	190	234	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++i + +eL el+P K++ ae+L A +Y+k Lq Cucsa.167440.1 190 TIAARERRRKITVKTQELGELVPGG-----SKMNTAEMLNSAFKYVKFLQ 234 56789****************95.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-11	184	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.182	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-11	187	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.59E-8	187	238	No hit	No description
SMART	SM00353	2.3E-9	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	190	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAALTYYSNF YSPDPSPYYH HFHYFSPEFS PDLSYVPPPQ LLNHPAAFDY VDDSLFYPTA 60 DTLLFDDALP FLFSDTYPCF SAPSVDEFLP VSSQFFPFDE FEFHCPKRQR AVFEHSFCCG 120 GGVGDGNVGG GGSGAGAGFF PSPPPPPPPL AEVFSGPWDS RMDNAEMRND CLKSQPSPAP 180 SSHNNLSAQT IAARERRRKI TVKTQELGEL VPGGSKMNTA EMLNSAFKYV KFLQAQVAIL 240 QLKQETEQEG QETENLEILE STMIQEKLYS EEKCLVPKGF IQNLADFPEI QSHPSIFNSI 300 NKILHNSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135746.1	0.0	PREDICTED: transcription factor bHLH52
TrEMBL	A0A0A0LY56	0.0	A0A0A0LY56_CUCSA; Uncharacterized protein
STRING	XP_004135746.1	0.0	(Cucumis sativus)
STRING	XP_004165008.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	6e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.167440.1
Entrez Gene	101220022

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]