PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 257aa MW: 26540.6 Da PI: 10.5046

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.166230.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.9	3.5e-38	31	121	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++ s s+ ++ g + Cucsa.166230.1 31 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSS---VSLSVRGNGGGsaslsspS 121 79******************************************************************8882...2222222222222333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-33	36	116	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	36	90	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNSDHTNGV SNGATIDTHK NHSSSNGALV VKKPPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPANF SSVSLSVRGN GGGSASLSSP 120 SSTTSTLSLS RPQPLSGPTP FILGKRVRSD DDAKDDALGV GQAVGSIVGP TGPGGYWAIP 180 ARPDYGQVWS FAAAAPSEMV VQPGGIAQQA SLFAQQQQPI REASAARVGN YLPGHLNLLA 240 SLSGGGGSGR REDDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143620.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	6e-89	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0A0KPX7	0.0	A0A0A0KPX7_CUCSA; Uncharacterized protein
STRING	XP_004171408.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-66	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.166230.1
Entrez Gene	101206050

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]