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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cucsa.165940.1 |
| Common Name | Csa_5G175970 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
AP2 |
| Protein Properties |
Length: 392aa MW: 42966.5 Da PI: 9.635 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.165940.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.9 | 4.5e-17 | 124 | 173 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Cucsa.165940.1 124 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 173
78*******************......55************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MMLDLNDSIT NRDETPTSRI VMEDSETSNS SVVNATDEVS NSRDEDSSVL IFDILKRESS 60
GGGSGGGASS ELVTQTLFPV VGGWGGFWVV SNSGGGGGPP ELRIVQQKQQ QVRKSRRGPR 120
SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF 180
NINDYDEDMK QMKNLSKEEF VHVLRRQSTG FSRGGSKLRG LSLQKYGRWE NQMSQIIGKN 240
GIEQRSCKGD AMVDSNNGAN GHNLDLSIGG IFNYHLTNSP QKLNIERPKE KGREKRNNDS 300
TTKMSTSWGW QMPTSTTMSM SMSMPTTIQG NISGKNNNSM SSNNGIIARD QEAHISKIVA 360
ASSGFSSSSN FGSLYAQNNN ALHSTHCPNI S*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | LN681896 | 1e-113 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. |
| GenBank | LN713264 | 1e-113 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
