PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.163550.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 359aa    MW: 40155.7 Da    PI: 6.3894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.163550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-13118169155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ +++Lr+l+P++   + ++ + a+i   A++++k+L+
  Cucsa.163550.1 118 QRMTHIVVERNRRKQMNEYLSTLRSLMPHS---YVQRGDQASIIGGAINFVKELE 169
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.98E-13116173No hitNo description
Gene3DG3DSA:4.10.280.102.7E-14117173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-17117184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MALEAVVFPQ DPFVYKDHLF MNLVNSSSCL NFIDNHQAND QDDHDFYYLP NLSVQNNSPI  60
FLDDDHYNFN DESVRQVVDS TLMTSEMKDG GGSERMGRRR QQRRRGKTQK NKEEIENQRM  120
THIVVERNRR KQMNEYLSTL RSLMPHSYVQ RGDQASIIGG AINFVKELEQ QVHLLSAQTY  180
HVNPFFPSHV PPNNNIIPSS SSSSPSSSSS SSSSSFPFSQ YPSFTFPSSS SPSSSSSSFS  240
LDDNNGSTIV AMTTSNNLNN LNSVIQTSIG DIEVSMVDSH ANLKIRCKKL PKQLLKIVSG  300
LHSLHLTVLH LNVSTAHPFV LYSFSLKVEE DCGLSSVDEI SNGVYQLLCR IQEEAFSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118129RMTHIVVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-171LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-171LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135630.20.0PREDICTED: transcription factor bHLH94
TrEMBLA0A0A0LW290.0A0A0A0LW29_CUCSA; Uncharacterized protein
STRINGXP_004135630.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-35bHLH family protein