PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.160520.5
Common NameCsa_2G370420, LOC101214596
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 329aa    MW: 36064.2 Da    PI: 4.8856
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.160520.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16204240135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Cucsa.160520.5 204 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 240
                     *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.01665100IPR010399Tify domain
SMARTSM009794.5E-765100IPR010399Tify domain
PfamPF062003.7E-106899IPR010399Tify domain
PROSITE profilePS5101712.65133175IPR010402CCT domain
PfamPF062038.8E-15133174IPR010402CCT domain
PROSITE profilePS501148.524198246IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-8198251IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-11199248No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14202245IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.11E-16203247No hitNo description
PROSITE patternPS003440204231IPR000679Zinc finger, GATA-type
PfamPF003206.2E-14204240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFQEHVQV PSMMADDDGE YEDGGGGGGG GDVMDDVEEA HMTSVSVANH  60
GGLVMASRAS ELTLSFEGEV YVFPEVTPEK VQAVLLLLGG RDVPADVPTM EVPYDHNNRG  120
MVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYTVRKE VAQRMHRKNG QFASLKESSG  180
ASSWESAHSC LQDGTRSETV LRKCQHCGVS ENNTPAMRRG PAGPRTLCNA CGLMWANKGT  240
LRDLSKGGRN VSLDHMEPET PMDVKPVIME GEFSGIQDEH DINETTGELT NSLPMRIVNH  300
SSNDDEQEPL VELANPSDTD IDIPTNFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-137LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-137LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649688.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL71e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3BBG60.0A0A1S3BBG6_CUCME; GATA transcription factor 24-like isoform X2
STRINGXP_004163951.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-68ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]