PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 438aa MW: 47048.2 Da PI: 7.8363

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.148640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.2	5.4e-31	196	254	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Cucsa.148640.1 196 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAlGCPVRKQVQRCAEDKTILITTYEGNHNHP 254 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-33	180	256	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-28	188	256	IPR003657	WRKY domain
PROSITE profile	PS50811	29.516	190	256	IPR003657	WRKY domain
SMART	SM00774	5.1E-37	195	255	IPR003657	WRKY domain
Pfam	PF03106	9.5E-27	197	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MVDDGVSPNP EEKRVKNERA VLQAELERIN SENLRLKDML NQVTSNYQTL QMQFNTLIQT 60 QKTEDVGDPI EENPDGSGGG GNNNNNNNTN ISNKLVPRQF MDLGLATNTE NDEASMSSSE 120 GRSGERSRSP GNTGEVASSK RQSPDQSSNW GSNNNNNNNK VPKFSSSSGK EVDQTEATMR 180 KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMALGCPVR KQVQRCAEDK 240 TILITTYEGN HNHPLPPAAM AMASTTSSAA RMLLSGSMSS ADGLMNSNFL ARTLLPCSSS 300 MATISASAPF PTVTLDLTQT PNPLFQRPAT GHFPIPFAAA APPQTFPQIF GHALYNQSKF 360 SGLQMSKDME APQPPPPPQN PFTDTLSAAG AAIASDPNFI AALATAMTSL IGGSHHQKEN 420 GNGNSNVDNK TSSNSQQ*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MVDDGVSPNP EEKRVKNERA VLQAELERIN SENLRLKDML NQVTSNYQTL QMQFNTLIQT  60
QKTEDVGDPI EENPDGSGGG GNNNNNNNTN ISNKLVPRQF MDLGLATNTE NDEASMSSSE  120
GRSGERSRSP GNTGEVASSK RQSPDQSSNW GSNNNNNNNK VPKFSSSSGK EVDQTEATMR  180
KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMALGCPVR KQVQRCAEDK  240
TILITTYEGN HNHPLPPAAM AMASTTSSAA RMLLSGSMSS ADGLMNSNFL ARTLLPCSSS  300
MATISASAPF PTVTLDLTQT PNPLFQRPAT GHFPIPFAAA APPQTFPQIF GHALYNQSKF  360
SGLQMSKDME APQPPPPPQN PFTDTLSAAG AAIASDPNFI AALATAMTSL IGGSHHQKEN  420
GNGNSNVDNK TSSNSQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	182	258	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658698.1	0.0	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9XEC3	1e-128	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A0A0K3J4	0.0	A0A0A0K3J4_CUCSA; Uncharacterized protein
STRING	XP_004144595.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-102	WRKY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.148640.1
Entrez Gene	101205587

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]