PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GeBP

Protein Properties

Length: 411aa MW: 47277.7 Da PI: 4.9597

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.148250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	125.9	1.7e-39	184	278	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlwse+Dei++LqG+idf+ +g++p+ d+++f +f+k+++s++vsk+ql++K+rrLKkK+k++++k ++g++p+f k+h++k+f lskkiWg Cucsa.148250.1 184 INRLWSEDDEISILQGMIDFELAKGSDPYTDMNQFLDFIKENLSVDVSKNQLIDKVRRLKKKYKNNSEKGRNGDDPVFLKQHEHKSFVLSKKIWG 278 68********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-33	185	278	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MAPKRLVEDL PSAHAFSDAE EESDYETHED PEIDNLMNNS EDENEEHNQE EEEDDDEEEE 60 QEQEEEHEHE QEIRSPIISK HENSLEKDSG FVSDSDSEKT QSSPSASAFT IKPILRKLAI 120 DSSKPKKSSH KSSIDCATTA NPVCSGSKRP IENHFQGNDP NKRIKRIMNG EDIEEVKKVS 180 GSGINRLWSE DDEISILQGM IDFELAKGSD PYTDMNQFLD FIKENLSVDV SKNQLIDKVR 240 RLKKKYKNNS EKGRNGDDPV FLKQHEHKSF VLSKKIWGNE AKKKPRKQSV KASNSVSISS 300 PRVDVEARKL KEIVNNNNVE SKILPEEFLS EYPWLKASFL MENDKFRSEV VLRFVRERMP 360 LIGSEKAKEL DDKWRKLGES EMELYMKKVD LVREQCKLIM DSMRKAKRST *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MAPKRLVEDL PSAHAFSDAE EESDYETHED PEIDNLMNNS EDENEEHNQE EEEDDDEEEE  60
QEQEEEHEHE QEIRSPIISK HENSLEKDSG FVSDSDSEKT QSSPSASAFT IKPILRKLAI  120
DSSKPKKSSH KSSIDCATTA NPVCSGSKRP IENHFQGNDP NKRIKRIMNG EDIEEVKKVS  180
GSGINRLWSE DDEISILQGM IDFELAKGSD PYTDMNQFLD FIKENLSVDV SKNQLIDKVR  240
RLKKKYKNNS EKGRNGDDPV FLKQHEHKSF VLSKKIWGNE AKKKPRKQSV KASNSVSISS  300
PRVDVEARKL KEIVNNNNVE SKILPEEFLS EYPWLKASFL MENDKFRSEV VLRFVRERMP  360
LIGSEKAKEL DDKWRKLGES EMELYMKKVD LVREQCKLIM DSMRKAKRST *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658715.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A0A0K1N4	0.0	A0A0A0K1N4_CUCSA; Uncharacterized protein
STRING	XP_008455395.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13966	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-32	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Cucsa.148250.1
Entrez Gene	101221546

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]