PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148220.1
Common NameCsa_7G044940, LOC101221071
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 445aa    MW: 50131.2 Da    PI: 7.0515
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2838.5e-87474252373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl.....fsev 87 
                     ++lL++c  a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r +r +++ + + +p++ s +     ++++l++  +     +++v
  Cucsa.148220.1  47 EKLLVHCGSALESHDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLRALVSRASRVCPSPSPTPTPTPMSFNGssirVETRLMS--VtdlarYVDV 139
                     689***************************************************99888877777777655555553333333..134599**** PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                      P+++f++ +aN aI++a+e+ ++vHi+Df+is+++QWp+L++aL++Rp+gppslRiT+ +   ++    +  ++++g  L+kfA++ ++pf+fn
  Cucsa.148220.1 140 IPWHRFGFCAANIAIYKAIERYQKVHILDFSISHCMQWPTLIDALSKRPQGPPSLRITVPSFRPQVpplLNIPTHQIGLCLTKFANSKNIPFQFN 234
                     **********************************************************9988666688889999********************* PP

            GRAS 180 vl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                     ++      ++ ++ ++++ L+++++Eal++n+++ l ++ d+       +++++++ k+l+P+++vvv+++ d++++s++ r++ +++y++  fd
  Cucsa.148220.1 235 LFpynhnNSNIISLFDPSILNLQHDEALVINCQHWLRYVSDD------DKNDFINATKRLNPRIMVVVDEDFDMTDSSLASRITTCFNYFWIPFD 323
                     *99876555567888*******************99999822......2458******************************************* PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                     +le+ l+++s +r  +E+  +g++i+n++  eg++r+er e+  k +er++ +G+ + p+ +++ +++k+ll++ +  g+ ++ e+++lvl+Wk+
  Cucsa.148220.1 324 ALETFLSKDSTQRLEYEAD-VGQRIENIIGFEGKQRVERLESCVKVSERMRYSGYLNQPFCDDVGDEVKALLAEQA-SGWGMKREEDALVLTWKG 416
                     *******************.9*****************************************************99.88999999********** PP

            GRAS 365 rpLvsvSaW 373
                     ++ v+v+aW
  Cucsa.148220.1 417 HNSVFVTAW 425
                     ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.76620407IPR005202Transcription factor GRAS
PfamPF035142.9E-8447425IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRAELRGKTS SISVHNNSTI LNRADNSTSV YGALKGCLGS LDGGCIEKLL VHCGSALESH  60
DVTLAQQVMW VLNNVASPVG DPNQRLTSWF LRALVSRASR VCPSPSPTPT PTPMSFNGSS  120
IRVETRLMSV TDLARYVDVI PWHRFGFCAA NIAIYKAIER YQKVHILDFS ISHCMQWPTL  180
IDALSKRPQG PPSLRITVPS FRPQVPPLLN IPTHQIGLCL TKFANSKNIP FQFNLFPYNH  240
NNSNIISLFD PSILNLQHDE ALVINCQHWL RYVSDDDKND FINATKRLNP RIMVVVDEDF  300
DMTDSSLASR ITTCFNYFWI PFDALETFLS KDSTQRLEYE ADVGQRIENI IGFEGKQRVE  360
RLESCVKVSE RMRYSGYLNQ PFCDDVGDEV KALLAEQASG WGMKREEDAL VLTWKGHNSV  420
FVTAWWSSIN LLEAIFRSTV CFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-544742534418Protein SHORT-ROOT
5b3h_E4e-544742534418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144576.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A0A0K3M70.0A0A0A0K3M7_CUCSA; Uncharacterized protein
STRINGXP_004144576.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-111GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]