PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.143950.1
Common NameCsa_5G221950, LOC101209388
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 345aa    MW: 38183.7 Da    PI: 6.6572
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.143950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11e-09142194557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  ++    
  Cucsa.143950.1 142 KRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTT 194
                     9*****************************************99988876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-15138202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53140203IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.86E-10142193No hitNo description
PfamPF001701.6E-8142196IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-9142196No hitNo description
CDDcd147036.60E-25143192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELPNPTNPM ASSSNPTPPF RGSFHRRAHS EVHFRIPDDL DLVSDPFDAP SSGFEDLGFE  60
DDLLCTFMDI EKIGSKIDNG SSSNPAMAAG GTGGVNVEGE KISRPRHRHS NSADGSSILE  120
SIEAKKAMDP DKLAELWTID PKRAKRILAN RQSAARSKER KARYIMELER KVQSLQTEAT  180
TLSAQLTLYQ RDTTGLSTEN SELKLRLQAM EQQAHLRDAL NEALKKEVER LKIATGEVMT  240
ATDSYNFGMP QVSYPQSSFS HQPQPGRHNP QRMTMQRPQV QPFHSNLPNP HQALFVASHQ  300
PHALTEMFQQ DPITRLQGLD IGSRGTEIKP EGPSISVSES SSTF*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819000.0LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146436.10.0PREDICTED: transcription factor RF2b
SwissprotO228731e-118BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A0A0KMA20.0A0A0A0KMA2_CUCSA; Uncharacterized protein
STRINGXP_004146436.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-117bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  6. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  7. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  8. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]