PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 270aa MW: 29464.3 Da PI: 7.3635

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.143360.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.2	3.8e-30	172	228	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p++VNaKQyq+Il+RRq+Rak+e+ekk +k+rkpylheSRh+hA+rR R+sgGrF Cucsa.143360.1 172 QDPVFVNAKQYQGILRRRQARAKAEAEKKS-IKARKPYLHESRHQHAIRRSRSSGGRF 228 58*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.2E-32	170	231	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.9	171	231	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.2E-26	174	228	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-22	174	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	176	196	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-22	205	228	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MQSKSETNNQ LDSNGAPSTS IYYEPWWRGM GYNTFPLPVV GGNASSSTSL EFPNGGSESN 60 DGQSVSNNDV NDEEDDVSKE VQATGSPHSA GSYRQDPQKM QHVSSTLPAM HGECLAQSTQ 120 LELVGHSIAC ASNPYQDPYY GGMMAFYGHQ PLGYPMVGGP HARMPLPIEI AQDPVFVNAK 180 QYQGILRRRQ ARAKAEAEKK SIKARKPYLH ESRHQHAIRR SRSSGGRFAK KSEAEGKEKH 240 SDKVNESGYR LNDGSEQQNG SSLTNKASE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-17	172	228	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681807	1e-143	LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBank	LN713256	1e-143	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139033.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like
Swissprot	Q9LXV5	2e-70	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A0A0M2S3	0.0	A0A0A0M2S3_CUCSA; Uncharacterized protein
STRING	XP_004154628.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	1e-54	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	Cucsa.143360.1
Entrez Gene	101212860

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]