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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.142970.1 |
Common Name | Csa_1G605650, LOC101217148 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C3H |
Protein Properties |
Length: 309aa MW: 32808 Da PI: 9.3987 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.142970.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 17.1 | 9.6e-06 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ f C++Gd+C +aHg+
Cucsa.142970.1 101 KTRLCNKFNSAEGCRFGDKCYYAHGE 126
8***********************96 PP
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2 | zf-CCCH | 26.3 | 1.3e-08 | 275 | 300 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C + +rC+FaHg+
Cucsa.142970.1 275 FKTKLCANFTK-GACTFRERCHFAHGE 300
69*********.*************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 1.6 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.211 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 38 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-7 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.57 | 45 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-12 | 97 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-7 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.062 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.99 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.049 | 105 | 125 | No hit | No description |
SuperFamily | SSF54791 | 4.53E-14 | 163 | 244 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.9E-11 | 172 | 242 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 5.6E-14 | 172 | 243 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 13.355 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.11E-11 | 175 | 237 | No hit | No description |
Pfam | PF00013 | 3.6E-9 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-14 | 273 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-8 | 274 | 304 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 274 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-5 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MDLDGARKRE RTETALNGNG GFKKSKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGVKS ISQMISPALP PGIRNPAPPQ SFPDGVPPAV KTRLCNKFNS AEGCRFGDKC 120 YYAHGEWELG RPNPPQDHGG MGPGPMQQPR MGGGWNAPPP PPNHGPAASF GASATAKISV 180 DASLAGPIIG KNGVNSKNIC RMTGARLSIK EHESDPNLKN IELEGTFDQI NLASSMVREL 240 IANVGAASAN NAMKQHQQHQ HHSGMQQSSG SANNFKTKLC ANFTKGACTF RERCHFAHGE 300 SELRKPGM*
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