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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.139620.1 |
| Common Name | Csa_6G177190 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 237aa MW: 27155.6 Da PI: 9.5886 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.139620.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 98.6 | 2.5e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
Cucsa.139620.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58
79***********************************************8 PP
|
| 2 | K-box | 105.6 | 5.8e-35 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+sg s++ea+ + +qqe++kLk++i+++q+++Rh+lGe L+sL lkeL++Le +Le++++k+R+kKne l++++e +qk+e elq++n++Lr+++
Cucsa.139620.1 78 NSGLSVAEANVQFYQQEATKLKRQIREIQNSNRHILGEALSSLPLKELKSLEGRLERGISKVRAKKNETLFAEMEFMQKREMELQSHNNYLRAQI 172
566669****************************************************************************************9 PP
K-box 99 ee 100
+e
Cucsa.139620.1 173 AE 174
86 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.964 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 9.4E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.13E-44 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 1.44E-32 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.5E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.5E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.5E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 4.2E-25 | 87 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.606 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0090376 | Biological Process | seed trichome differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN 60
SVRGTIERYK KAFADSSNSG LSVAEANVQF YQQEATKLKR QIREIQNSNR HILGEALSSL 120
PLKELKSLEG RLERGISKVR AKKNETLFAE MEFMQKREME LQSHNNYLRA QIAEHERIQQ 180
QQQQQQQTNM MQRATYESVG GQYDDENRST YGAVGALMDS DSHYAPQDHL TALQLV*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 5f28_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 5f28_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 5f28_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 6byy_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
| 6byy_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
| 6byy_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
| 6byy_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
| 6bz1_A | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
| 6bz1_B | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
| 6c9l_A | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Publications
? help Back to Top |
- Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
Plant Mol. Biol., 2001. 45(5): p. 541-53
[PMID:11414613] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751]
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