PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.139480.1
Common NameCsa_6G181550, LOC101207667
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 163aa    MW: 18105.8 Da    PI: 5.5815
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.139480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.95.3e-4171061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++apyfp ++p kfa+vhk+FGasnv+k+l+++p ++r da+ss+vyeA ar++dPvyG+vg il lq++++ql+ +l 
  Cucsa.139480.1   7 PCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQRADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLG 101
                     7*******************************************************************************************999 PP

          DUF260  96 llkee 100
                     ++++e
  Cucsa.139480.1 102 AARAE 106
                     88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.4256107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-407103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGVGSSPCAS CKLLRRRCAK DCIFAPYFPP HDPLKFAIVH KIFGASNVSK MLQEVPVDQR  60
ADAVSSMVYE ASARMQDPVY GCVGKILFLQ NEVSQLEIQL GAARAEILML QMRQQQEASI  120
TFPMTTTQMD QDEQNLMILS NADSSNSFHV FQAADDHYPL WT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4421267130LOB family transfactor Ramosa2.1
5ly0_B2e-4421267130LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819221e-106LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132651e-106LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143222.11e-120PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW33e-64LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0A0KBK51e-118A0A0A0KBK5_CUCSA; Uncharacterized protein
STRINGXP_004162401.11e-119(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-66LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]