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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.138470.1 |
| Common Name | Csa_1G628000, LOC101217349 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
SRS |
| Protein Properties |
Length: 308aa MW: 31146.6 Da PI: 8.7366 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.138470.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 196.5 | 8.7e-61 | 92 | 257 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaes 96
g +C+dCGnqakkdC+h+RCR CCksrgfdC+thvkstWvpaa+rrerq + aa+ + a ++ +++ k++r ++++++ s+t++s++ +
Cucsa.138470.1 92 GVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSsgSTSGGKKPRLI-ASQTTTNSHTSTSNTPT 185
5568*********************************************9999998887777663345555556554.44444444555544443 PP
DUF702 97 kkeletss...........lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGlee 154
+ ++++ss lPe+++++avf+cvrv++v+ g +e+aYq++v+igGhvfkG+Lyd+G+e+
Cucsa.138470.1 186 P-SFDASSaadmsskkakkLPEQIRAPAVFKCVRVTAVEGgtsgGGNEYAYQAVVKIGGHVFKGYLYDHGVEA 257
3.55555556677789999*******************9733335689**********************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MWPSSRPLTI GYNHTPAPTP DMVGLMASGF GVGVSVLPLL SGLAPSSVGI EEANLMISRG 60
GGGDDGGGGI QFNGNNLDGF GILGGGSSLN SGVGTCHDCG NQAKKDCSHR RCRSCCKSRG 120
FDCSTHVKST WVPAARRRER QMMGAASDAA AGGTSSGSTS GGKKPRLIAS QTTTNSHTST 180
SNTPTPSFDA SSAADMSSKK AKKLPEQIRA PAVFKCVRVT AVEGGTSGGG NEYAYQAVVK 240
IGGHVFKGYL YDHGVEARDG FPMMSNLHLG DGGSTSSPVI DPADVYGSST TRGGGLAGGS 300
GYGNSIN*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-46 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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