 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.137650.3 |
Common Name | Csa_6G405890 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
Family |
ARF |
Protein Properties |
Length: 606aa MW: 66714.1 Da PI: 7.1152 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.137650.3 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 72.6 | 5e-23 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f k+lt+sd+++ g +++p+ +ae++ ++ +t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +
Cucsa.137650.3 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVEP--PVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RAE 208
89****************************974333..3459************************************************..448 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
++ l+++v+r+
Cucsa.137650.3 209 TGDLCIGVRRA 219
9999****996 PP
|
2 | Auxin_resp | 103.1 | 3.5e-34 | 277 | 360 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
aa a++++ Fe+vY+P a+t+eFvvk++++++a+++++ mRfkm fetedss++++ +Gtv++++++dp+rWp+S+Wr+L+
Cucsa.137650.3 277 AAMLAASGQSFEIVYYPCAGTPEFVVKASSLRSAMQIHWYSAMRFKMPFETEDSSRISWfMGTVSSIQAADPIRWPDSPWRMLQ 360
5778999***************************************************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 606 aa
Download sequence Send
to blast |
MDSVIDPMMN HDKHLDSQLW HACAGGLIQL PTINSKVVYF PQGHTEHAQG NVDFGNARIP 60 SIIPCRVSGI RHMADPETDE VFAKIKLSPL ANNEFNLDNE DDLLIHNELK SQDKPTSFAK 120 TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VEPPVQTILA KDVHGEIWKF RHIYRGTPRR 180 HLLTTGWSSF VNQKKLVAGD SIVFLRAETG DLCIGVRRAK RGIGCGIDYS PGWNPTNSGS 240 SLVGYSDYMR ESEGRLGRRN SNGNLSGRVK VESVIEAAML AASGQSFEIV YYPCAGTPEF 300 VVKASSLRSA MQIHWYSAMR FKMPFETEDS SRISWFMGTV SSIQAADPIR WPDSPWRMLQ 360 VTWDEPDLLQ NVKSVNPWLV EVVVNMPAIH VSPFSPPRKK PRFPLQADSS GFGHLPMPSF 420 STNIFDTTNP LQGITANKIP AGIQGARHTQ FGLSSPNLQI SKLLPGQFSP GLKHLDDATP 480 LPGIRGEDIF AGMKNPDNCS LWLPMRNHIQ SSKESSKESS KESSKESKET KPAHIILFGQ 540 LIFPNQQNSN SCSGDTMNAS DANQEKASNL SDGSGLSSQQ NGSLENSSEG GSTLYNGRMK 600 NYIEN*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KC843344 | 0.0 | KC843344.1 Cucumis sativus auxin response factor 10c (ARF10c) mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Huang J,Li Z,Zhao D
Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]
|