PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 411aa MW: 45612.8 Da PI: 4.7961

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.136780.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	69	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a++ ++g Cucsa.136780.1 69 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARTMYG 119 56***999.******8...3.35*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.5E-13	69	119	IPR001471	AP2/ERF domain
CDD	cd00018	1.01E-30	69	128	No hit	No description
SMART	SM00380	1.1E-36	70	133	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.4E-31	70	128	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.45E-20	70	127	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.509	70	127	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	71	82	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	93	109	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0010286	Biological Process	heat acclimation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MISETIERKR KSRSRRDRST VAETLAKWKA YNECFDSSNN GGKLIRKAPA KGSKKGCMKG 60 KGGPLNSHCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTAIEAALAY DEAARTMYGQ 120 TARLNLPNIK NRGQLQGILL EEYLGLRNSD SSTTTSACSE STTTTSNQSE VCVPEEFTMR 180 PRLVSLNVKT EDGEGESKTC DHGDETATPM NQVKHEDRND QLVALGAEFP CLDQLENFQM 240 DEMFEPRTGT QAGHMVMPVS LEKQVKDEDL DAVYCGRSDD QAVLSEAGVP SLYDLHNFQM 300 DELFDVEELL SLINSDSLHD PTNIVKGNAD AYTNMAPSHV GSVGSEKPPN RSYQIQNPDA 360 KLLGSPQQME RTLADVDYGF DFLKQGREED LNAAADDCVR YLNEIGDLGF *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MISETIERKR KSRSRRDRST VAETLAKWKA YNECFDSSNN GGKLIRKAPA KGSKKGCMKG  60
KGGPLNSHCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTAIEAALAY DEAARTMYGQ  120
TARLNLPNIK NRGQLQGILL EEYLGLRNSD SSTTTSACSE STTTTSNQSE VCVPEEFTMR  180
PRLVSLNVKT EDGEGESKTC DHGDETATPM NQVKHEDRND QLVALGAEFP CLDQLENFQM  240
DEMFEPRTGT QAGHMVMPVS LEKQVKDEDL DAVYCGRSDD QAVLSEAGVP SLYDLHNFQM  300
DELFDVEELL SLINSDSLHD PTNIVKGNAD AYTNMAPSHV GSVGSEKPPN RSYQIQNPDA  360
KLLGSPQQME RTLADVDYGF DFLKQGREED LNAAADDCVR YLNEIGDLGF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-17	70	127	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-17	70	134	5	70	ATERF1
3gcc_A	1e-17	70	134	5	70	ATERF1
5wx9_A	7e-17	59	133	3	78	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	16	RKSRSRRD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00302	DAP	Transfer from AT2G40340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681815	0.0	LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138558.1	0.0	PREDICTED: dehydration-responsive element-binding protein 2C isoform X2
TrEMBL	A0A0A0KBP3	0.0	A0A0A0KBP3_CUCSA; Dehydration-responsive element-binding protein 2C
STRING	XP_004138558.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1175	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	3e-37	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.136780.1
Entrez Gene	101215431

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]