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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.131910.1 |
| Common Name | Csa_2G006070, LOC101208310 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
C3H |
| Protein Properties |
Length: 348aa MW: 38566.2 Da PI: 7.856 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.131910.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.5 | 2.3e-08 | 91 | 115 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+ C f G C+ G++C+FaHg
Cucsa.131910.1 91 FKTRMCAKFKL-GLCRNGASCNFAHG 115
69*********.*************9 PP
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| 2 | zf-CCCH | 30.8 | 4.8e-10 | 150 | 174 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25
+k++lCr f+ + +C+yGdrC+F H
Cucsa.131910.1 150 QKMKLCRKFYNGEECPYGDRCNFLH 174
5999*******66************ PP
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| 3 | zf-CCCH | 42.2 | 1.4e-13 | 237 | 263 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC + tG+C++Gd+C+FaHg+
Cucsa.131910.1 237 WKTKLCTKWEITGHCPFGDKCHFAHGQ 263
8************************97 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-13 | 88 | 123 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-7 | 89 | 121 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0021 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.798 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.2E-5 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.403 | 149 | 177 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-7 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.1E-5 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-7 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.7E-10 | 151 | 175 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.9E-18 | 232 | 267 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.77E-11 | 233 | 268 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.089 | 236 | 264 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.9E-8 | 236 | 263 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.3E-11 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MSFNDMRASV IPPPLHSYGS NGDASGCWSQ FPRNDPFDPQ SQFEVQQPPY KRARNSEENP 60
SSPISYSNPS LNSRGQPPNA PVNKGISNIF FKTRMCAKFK LGLCRNGASC NFAHGVEDMR 120
QPPPNWQEIV GIKEDDQSVN NWNDDQKIIQ KMKLCRKFYN GEECPYGDRC NFLHEDPAKF 180
RDDSGRFRES SAISIGTTGT PLMNGNDSSS YIEPSRVTSC SVSDALRANG NVRPSFWKTK 240
LCTKWEITGH CPFGDKCHFA HGQSELQLYI GREGEVSTAA LNVKPLIVAM EASSSLTTNV 300
VPSSALPEGQ EKPSLLKWKG PKKINRIYAD WLDDLPLSPS STSKMEG*
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