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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.129320.1 |
| Common Name | Csa_5G167120, LOC101221306 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
ERF |
| Protein Properties |
Length: 236aa MW: 25882.2 Da PI: 8.474 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.129320.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.5 | 9.4e-20 | 85 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp ++g +r++lg+++ta eAaka+++a+ +++g
Cucsa.129320.1 85 HYRGVRRRP-WGKFAAEIRDPAKRG--ARVWLGTYDTAIEAAKAYDRAAFRMRG 135
7********.**********97765..*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MDDASTLDLI RQHLLNDFNS IEAFASNLNF DHNSGVNSQI SSPTPSKVAP RRPSLNVAIP 60
PKSISVGSAV ETSIEAKSDV GVSRHYRGVR RRPWGKFAAE IRDPAKRGAR VWLGTYDTAI 120
EAAKAYDRAA FRMRGSKAIL NFPLEAGKDV EDPQSTSDVG RKRRRESESE VVEMGKKEMK 180
KEERSETEEI GVPTTVCPLT PSCWASVWDS DGKGIFNVPP LSPYPLMGHP QCTVI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Moore M,Vogel M,Dietz K
The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
Plant Signal Behav, 2014. 9(10): p. 976479
[PMID:25482793] - Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
Plant Cell Environ., 2017. 40(1): p. 108-120
[PMID:27723941] - König K,Vaseghi MJ,Dreyer A,Dietz KJ
The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
Physiol Plant, 2018. 162(3): p. 262-273
[PMID:28984358]
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