PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.118900.1

Common Name

Csa_6G133680, LOC101205663

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 397aa MW: 42573.4 Da PI: 6.8551

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.118900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.9e-10	197	245	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + Cucsa.118900.1 197 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 245 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-16	193	257	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	195	258	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	197	248	No hit	No description
Pfam	PF00170	1.4E-8	197	245	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.1E-10	197	251	No hit	No description
CDD	cd14703	4.06E-23	198	247	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MQDPPPPSNP IPTPNSNQIP PLNLTQPPPK THKPPPPPLV SNATAAPSSS SIFPNVNAGN 60 ASFIPRLGSH HRRAHSEVSF RLPEDMMDIS GSDPFNGGSS TASLEEIGSE DDLFSTYIDV 120 KKLGGNGGGN FVDHYGNGGC EGGAAGSEGE KTSKPRHRHS VSVDGTTSSS SMFGEIMEAK 180 KAMPPDKLAE LWSSDPKRAK RILANRQSAA RSKERKARYI QELERKVQTL QTEATTLSAQ 240 LTLFQRDTTG LSTENTELKL RLQAMEQQAQ LRDALNDALK KEVERLKIAT GEMMSPSESF 300 NLGMHHMAYA PSSFIQLSQQ QPGSTGLQNM QIPPFGHSPS NMSTHPLLPS DSHSLSEVLQ 360 TDSLGRLQGL DISSKGSSHV KSEGPSLSAS ESSTTF*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MQDPPPPSNP IPTPNSNQIP PLNLTQPPPK THKPPPPPLV SNATAAPSSS SIFPNVNAGN  60
ASFIPRLGSH HRRAHSEVSF RLPEDMMDIS GSDPFNGGSS TASLEEIGSE DDLFSTYIDV  120
KKLGGNGGGN FVDHYGNGGC EGGAAGSEGE KTSKPRHRHS VSVDGTTSSS SMFGEIMEAK  180
KAMPPDKLAE LWSSDPKRAK RILANRQSAA RSKERKARYI QELERKVQTL QTEATTLSAQ  240
LTLFQRDTTG LSTENTELKL RLQAMEQQAQ LRDALNDALK KEVERLKIAT GEMMSPSESF  300
NLGMHHMAYA PSSFIQLSQQ QPGSTGLQNM QIPPFGHSPS NMSTHPLLPS DSHSLSEVLQ  360
TDSLGRLQGL DISSKGSSHV KSEGPSLSAS ESSTTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681920	0.0	LN681920.1 Cucumis melo genomic scaffold, anchoredscaffold00113.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140027.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-108	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0A0KD34	0.0	A0A0A0KD34_CUCSA; Uncharacterized protein
STRING	XP_004166348.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-94	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.118900.1
Entrez Gene	101205663

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]