PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CPP

Protein Properties

Length: 589aa MW: 62852.2 Da PI: 7.7408

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.116430.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.1	4.1e-14	118	157	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C N+ e+ Cucsa.116430.1 118 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCINCYNNVEN 157 89************************.******9875 PP
2	TCR	50.9	3.1e-16	202	241	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Cucsa.116430.1 202 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 241 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-16	117	157	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.57	118	242	IPR005172	CRC domain
Pfam	PF03638	3.5E-11	119	154	IPR005172	CRC domain
SMART	SM01114	8.4E-20	202	243	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-12	205	240	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MGEEDSVGAS QKKAQSDGAT LSNSSSSDIP SKKLARQLDF TGYGGASNTQ SHSSSHSQSQ 60 ASLVAQNLPQ AQPKPQTQMV AASIAPLAPL SSVRAVKPES PMSRARPAIE AKDSTPKKQK 120 QCNCKHSRCL KLYCECFASG IYCDGCNCIN CYNNVENDAA RREAVEATLE RNPNAFRPKI 180 ASSPHGMRDS REEAGELLML GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF 240 EGSEERQALF HGDHGSNMTF IQQAANAAIT GAIGSSGYAS PPVSKKRKGQ ELYFGPTAKD 300 ISAHRPGPFQ QANHIRATAP PLPSFPIAGV GSPSVLGPSK FTYRSLMADI IQSQDLKDLC 360 SVLVVLSSEA AKTIQDQTSA TEKQSDGQTE TSVASSTQDG QKKDASDEKS AADDRSSANQ 420 ADKITPDDSN SDGGDVPKGA PMSPGTLALM CDEQDTMLMA AASPNRLMGP GCSTSSQLPH 480 GQDTSEIYAE QERIVLTKFR DCLNRLITLG EIKETKCSSL ARSEVGNQEQ QFNNGTTNSK 540 TDTQSNLGQL NNKVTKPSIT PSVKTSQTVT PAVMTLSNDQ RQKVLPLS*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MGEEDSVGAS QKKAQSDGAT LSNSSSSDIP SKKLARQLDF TGYGGASNTQ SHSSSHSQSQ  60
ASLVAQNLPQ AQPKPQTQMV AASIAPLAPL SSVRAVKPES PMSRARPAIE AKDSTPKKQK  120
QCNCKHSRCL KLYCECFASG IYCDGCNCIN CYNNVENDAA RREAVEATLE RNPNAFRPKI  180
ASSPHGMRDS REEAGELLML GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF  240
EGSEERQALF HGDHGSNMTF IQQAANAAIT GAIGSSGYAS PPVSKKRKGQ ELYFGPTAKD  300
ISAHRPGPFQ QANHIRATAP PLPSFPIAGV GSPSVLGPSK FTYRSLMADI IQSQDLKDLC  360
SVLVVLSSEA AKTIQDQTSA TEKQSDGQTE TSVASSTQDG QKKDASDEKS AADDRSSANQ  420
ADKITPDDSN SDGGDVPKGA PMSPGTLALM CDEQDTMLMA AASPNRLMGP GCSTSSQLPH  480
GQDTSEIYAE QERIVLTKFR DCLNRLITLG EIKETKCSSL ARSEVGNQEQ QFNNGTTNSK  540
TDTQSNLGQL NNKVTKPSIT PSVKTSQTVT PAVMTLSNDQ RQKVLPLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-32	110	251	2	132	Protein lin-54 homolog
5fd3_B	6e-32	110	251	2	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00045	PBM	Transfer from AT4G29000	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011648652.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
Swissprot	Q9SZD1	0.0	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A0A0LFV2	0.0	A0A0A0LFV2_CUCSA; Uncharacterized protein
STRING	XP_008458475.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2626	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Cucsa.116430.1
Entrez Gene	101211978

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]