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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.115490.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 283aa MW: 32665.7 Da PI: 9.8276 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.115490.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 97.1 | 7.4e-31 | 73 | 123 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRrng+lKKA+ELSvLCdaev+viifs++g+lye+ss
Cucsa.115490.1 73 KRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSS 123
79***********************************************96 PP
|
| 2 | K-box | 55.5 | 2.4e-19 | 146 | 235 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+e +++l+qe++ k+ie+L+++q +llG +L+s+s++e++++e+qL sl++iR++K +l++eq e+l +k k l een +L++k
Cucsa.115490.1 146 RSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKC 235
6677899*******************************************************************************9985 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 6.4E-41 | 65 | 124 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.562 | 65 | 125 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.7E-31 | 67 | 87 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 67 | 121 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 9.94E-33 | 67 | 139 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.91E-43 | 67 | 142 | No hit | No description |
| Pfam | PF00319 | 1.5E-26 | 74 | 121 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.7E-31 | 87 | 102 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.7E-31 | 102 | 123 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 12.998 | 151 | 241 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 4.4E-19 | 152 | 235 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009838 | Biological Process | abscission |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0080187 | Biological Process | floral organ senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MLLLVLRVRL RNGDRFPFLP LLGFLLSSSH FHTIIFSFFF FFFFTLHSSI ILYKTPWDKF 60
GKNDMVRGKV EMKRIENSTS RQVTFSKRRN GLLKKAYELS VLCDAEVSVI IFSQKGRLYE 120
FSSSDMQKTI ERYRKHGKDG QSNPFRSEGY MQQLKQEAEM TAKKIEQLEK SQQKLLGRGL 180
DSCSFEEIRE IERQLVLSLT RIRETKAQLF KEQKEKLIEK GKLLLEENLK LSAKCGTKPW 240
QEEGVEGDGG INMMSNLCSQ STNSQASDHH MQTDLFIGLS CS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1egw_A | 3e-19 | 67 | 142 | 2 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 3e-19 | 67 | 142 | 2 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 3e-19 | 67 | 142 | 2 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 3e-19 | 67 | 142 | 2 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1tqe_P | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 4e-19 | 65 | 142 | 1 | 78 | MEF2C |
| 5f28_B | 4e-19 | 65 | 142 | 1 | 78 | MEF2C |
| 5f28_C | 4e-19 | 65 | 142 | 1 | 78 | MEF2C |
| 5f28_D | 4e-19 | 65 | 142 | 1 | 78 | MEF2C |
| 6c9l_A | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 4e-19 | 65 | 142 | 1 | 78 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
