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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.114750.4 | ||||||||
Common Name | Csa_4G054800, LOC101212500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 934aa MW: 103030 Da PI: 6.4471 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.5 | 3.2e-29 | 529 | 580 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Cucsa.114750.4 529 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 580 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.871 | 519 | 600 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.5E-26 | 533 | 580 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.25E-23 | 831 | 919 | No hit | No description |
PROSITE profile | PS51745 | 25.938 | 837 | 919 | IPR000270 | PB1 domain |
SMART | SM00666 | 3.2E-25 | 837 | 919 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.26E-37 | 838 | 918 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.7E-25 | 838 | 918 | No hit | No description |
Pfam | PF00564 | 7.2E-19 | 838 | 918 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 934 aa Download sequence Send to blast |
MMMMILSLLP MLALFLLRAG TSNSHSVPQK PTENQKFKIL PVPSSSWGVL PSENPDGYCL 60 IKEKMAQALR YIKESSDQHV LAQVWAPVKS GGKLVLSTSG QPFFLDSQSN GLHQYRMASL 120 TFSFSLDADQ DGYLGLPGRV FQQKLPEWTP NVQYYSSKEY PRLSHALNYN VQGTLALPVF 180 DPSGHSCLGV LELIMTSPKI NYAPEVDKVC KALEAVNLKS SEILDHPNNQ IQSWQCLSNQ 240 ICNEGRQNAL AEILEVLTVV CETHNLPLAQ TWVPCRHRNV LANGGGLKKS CTSFDGSCMG 300 RICMSATEVA SYVVDAHMWG FRDACLEHHL QKGQGVSGRA FLSHSSCFCG DVTQFCKTEY 360 PLVHYALMFG LKSCFSICLR STFTGDDEYI LEFFLPPSIV DYQEQKNLLG ALMATMKKHF 420 YTLKVASGIN LEDKEGLVEI IQASRNGGFD SRFEYIQIPR PVQLPPASDA MPKAVEVAAL 480 ETLEQQSLMV HDAPKDENNG AWDGESHKSV PCPQNKEVKK TSERKRGKAE KSISLEVLQQ 540 YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGAEGA 600 FGISSLATSP LPVTVSSSSH PLTPEGSNQQ NFVASQPSDS QYKETNTPEA QTNDTQARLE 660 DRLHRGVLSP EEPIHEQNGF LPKFGNGLNN FRTGSGSREE SAGTPTSHGS CQGSPANDSA 720 LANNPISIRQ HEQCARRESP EVAFHPIDKL NISAPPCSIP DTLVMVEPEE PFGGMLIEDA 780 GSSKDLKNLC ASVADAVLDE QVPEFCWSNH HDIALRQPMD SVCHTVPHIS LRQEPRRMTI 840 KATYKEDIIR FRIPLTSGIV ELREEVAKRL KLEVGTFDIK YMDDDREWVL IACDADLQEC 900 VDISKSSGSN IIRLSVHDLN VNLGSSCEST GGE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653228.1 | 0.0 | PREDICTED: protein NLP7-like isoform X3 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A0A0KX54 | 0.0 | A0A0A0KX54_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149006.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.114750.4 |
Entrez Gene | 101212500 |