PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.114750.4
Common NameCsa_4G054800, LOC101212500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Nin-like
Protein Properties Length: 934aa    MW: 103030 Da    PI: 6.4471
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.114750.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.53.2e-29529580152
          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  Cucsa.114750.4 529 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 580
                     589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.871519600IPR003035RWP-RK domain
PfamPF020423.5E-26533580IPR003035RWP-RK domain
SuperFamilySSF542774.25E-23831919No hitNo description
PROSITE profilePS5174525.938837919IPR000270PB1 domain
SMARTSM006663.2E-25837919IPR000270PB1 domain
CDDcd064074.26E-37838918No hitNo description
Gene3DG3DSA:3.10.20.2401.7E-25838918No hitNo description
PfamPF005647.2E-19838918IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MMMMILSLLP MLALFLLRAG TSNSHSVPQK PTENQKFKIL PVPSSSWGVL PSENPDGYCL  60
IKEKMAQALR YIKESSDQHV LAQVWAPVKS GGKLVLSTSG QPFFLDSQSN GLHQYRMASL  120
TFSFSLDADQ DGYLGLPGRV FQQKLPEWTP NVQYYSSKEY PRLSHALNYN VQGTLALPVF  180
DPSGHSCLGV LELIMTSPKI NYAPEVDKVC KALEAVNLKS SEILDHPNNQ IQSWQCLSNQ  240
ICNEGRQNAL AEILEVLTVV CETHNLPLAQ TWVPCRHRNV LANGGGLKKS CTSFDGSCMG  300
RICMSATEVA SYVVDAHMWG FRDACLEHHL QKGQGVSGRA FLSHSSCFCG DVTQFCKTEY  360
PLVHYALMFG LKSCFSICLR STFTGDDEYI LEFFLPPSIV DYQEQKNLLG ALMATMKKHF  420
YTLKVASGIN LEDKEGLVEI IQASRNGGFD SRFEYIQIPR PVQLPPASDA MPKAVEVAAL  480
ETLEQQSLMV HDAPKDENNG AWDGESHKSV PCPQNKEVKK TSERKRGKAE KSISLEVLQQ  540
YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGAEGA  600
FGISSLATSP LPVTVSSSSH PLTPEGSNQQ NFVASQPSDS QYKETNTPEA QTNDTQARLE  660
DRLHRGVLSP EEPIHEQNGF LPKFGNGLNN FRTGSGSREE SAGTPTSHGS CQGSPANDSA  720
LANNPISIRQ HEQCARRESP EVAFHPIDKL NISAPPCSIP DTLVMVEPEE PFGGMLIEDA  780
GSSKDLKNLC ASVADAVLDE QVPEFCWSNH HDIALRQPMD SVCHTVPHIS LRQEPRRMTI  840
KATYKEDIIR FRIPLTSGIV ELREEVAKRL KLEVGTFDIK YMDDDREWVL IACDADLQEC  900
VDISKSSGSN IIRLSVHDLN VNLGSSCEST GGE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653228.10.0PREDICTED: protein NLP7-like isoform X3
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A0A0KX540.0A0A0A0KX54_CUCSA; Uncharacterized protein
STRINGXP_004149006.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  5. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  6. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  7. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  8. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  9. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  10. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  11. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  12. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  13. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  14. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  15. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]