PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 431aa MW: 47066.7 Da PI: 7.5474

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.112810.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	97	157	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrk+k+s Cucsa.112810.1 97 PDKLLPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKSKNSA 157 78999****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	85	154	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	99	155	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	101	155	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	103	139	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MLDSKDPTIK LFGRQIPLSD DAEPPALLSH AEHRKDAAID EPEKPVDDSD DSGNIERGEE 60 ASVNPKTPSI DEETTTTPVD GEPESEKSNS EKTLKKPDKL LPCPRCKSME TKFCYYNNYN 120 VNQPRHFCKA CQRYWTAGGT MRNVPVGAGR RKSKNSASYY RHITISEALE AARIESPNGT 180 HKPKFISNNG RVLSFNLDAP TSDPVMGSVL NLGENRVLSN GVKKFEEKGV DQGCEKSSSL 240 SSMPVQSSSE LKINGFPSQI SCLSGVPWPF VWNSSVPPPA FTPPGFPMSF FPAAAWNSGV 300 PGPWNTPWFS PQPEKSLCSD TKASSTLGKH QRDHEMSKED AISSKEEGIK KRNGHVLTPK 360 TLRIDDPSEA AKSSIWATLG IKNESITGGK NLFKTFQPKG HEKVHVAETS SVLQANPAAL 420 SRSLVFHESS *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MLDSKDPTIK LFGRQIPLSD DAEPPALLSH AEHRKDAAID EPEKPVDDSD DSGNIERGEE  60
ASVNPKTPSI DEETTTTPVD GEPESEKSNS EKTLKKPDKL LPCPRCKSME TKFCYYNNYN  120
VNQPRHFCKA CQRYWTAGGT MRNVPVGAGR RKSKNSASYY RHITISEALE AARIESPNGT  180
HKPKFISNNG RVLSFNLDAP TSDPVMGSVL NLGENRVLSN GVKKFEEKGV DQGCEKSSSL  240
SSMPVQSSSE LKINGFPSQI SCLSGVPWPF VWNSSVPPPA FTPPGFPMSF FPAAAWNSGV  300
PGPWNTPWFS PQPEKSLCSD TKASSTLGKH QRDHEMSKED AISSKEEGIK KRNGHVLTPK  360
TLRIDDPSEA AKSSIWATLG IKNESITGGK NLFKTFQPKG HEKVHVAETS SVLQANPAAL  420
SRSLVFHESS *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137585.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A0A0LVJ4	0.0	A0A0A0LVJ4_CUCSA; DOF domain class transcription factor
STRING	XP_004137585.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-100	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Cucsa.112810.1
Entrez Gene	101219706

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]