 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.111990.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
B3 |
| Protein Properties |
Length: 424aa MW: 47468.3 Da PI: 8.4722 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.111990.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 47.6 | 2.9e-15 | 287 | 368 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79
f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+
Cucsa.111990.1 287 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPVKVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDT 368
99**************************555556677***************9989999999***9.***************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 424 aa
Download sequence Send
to blast |
QIIDVLTTGL PKWQFNYLID NYFLQEFEVL LASHHDVCAV IAEFLLHLPF RDKGHFWWFE 60
RIRRDEISNG FDAVTGGNVG LLRPASVKDQ VVGNGINEEK LLQLCNIMEA NEPDHFQQSQ 120
RVDRSASPTQ NRGENLRNPF GEVGSSFFNM NKIPVNCQPS VGSFTYSKLD TSRPHLELKD 180
MKESLTQPSL SITLGVPLGS AAHEDEKSIL PFQQGQRSRP IFPKLIKTGT TVNSEARKGM 240
APLVRIARPP AEGRGKNQLL PRYWPRITDQ ELEQLSGDLN STIVPLFEKV LSASDAGRIG 300
RLVLPKACAE AYFPPISQSE GLPVKVQDVK GNEWTFQFRF WPNNNSRMYV LEGVTPCIQS 360
MQLRAGDTGN LSIIPQGLNK VSALQGSSPI IDSNLLLNPT QFNMKVLVVV LIRFHKKSFF 420
TQI*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5yzy_C | 8e-60 | 265 | 377 | 1 | 113 | B3 domain-containing transcription repressor VAL1 |
| 5yzz_C | 8e-60 | 265 | 377 | 1 | 113 | B3 domain-containing transcription repressor VAL1 |
| 5z00_C | 8e-60 | 265 | 377 | 1 | 113 | B3 domain-containing transcription repressor VAL1 |
| 5z00_G | 8e-60 | 265 | 377 | 1 | 113 | B3 domain-containing transcription repressor VAL1 |
| 5z00_K | 8e-60 | 265 | 377 | 1 | 113 | B3 domain-containing transcription repressor VAL1 |
| 5z00_M | 8e-60 | 265 | 377 | 1 | 113 | B3 domain-containing transcription repressor VAL1 |
| 6j9a_A | 9e-60 | 265 | 377 | 2 | 114 | B3 domain-containing transcription repressor VAL1 |
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