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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.109320.1 | ||||||||
Common Name | Csa_2G249860, LOC101205137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 682aa MW: 74908 Da PI: 6.4723 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3e-09 | 425 | 462 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Cucsa.109320.1 425 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 462 664559******************************88 PP | |||||||
2 | BELL | 124.5 | 4.3e-40 | 287 | 358 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+k +kLl +l+eVd+rY+qy++q+q+v+ssF+++ag+g++kpYt+lAl++iSrhFrcL+daia+q+ Cucsa.109320.1 287 EKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQV 358 6899*****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.8E-58 | 201 | 356 | IPR006563 | POX domain |
Pfam | PF07526 | 8.5E-51 | 207 | 355 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.212 | 403 | 466 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-9 | 406 | 470 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.64E-13 | 406 | 467 | No hit | No description |
SuperFamily | SSF46689 | 2.4E-17 | 407 | 474 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-29 | 409 | 472 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-18 | 423 | 462 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MATYFSSSNN ERDTTPILYS RGSLLGSYEE TTILPRNMMM HVNSGTYMDS LPSQAQNGCG 60 QITSVGAAGT TQQQQEFLSN LGGSQIAEHD FNTWREDRSE MLGANSMRGP TNVLHGGQNL 120 QGQGLSLTLS TQIPSAIQIP SIPYRNSDMG LTSFLSPNPT NSGEDGCRNG ASRDEQLRNG 180 ENLPPNFQEL AKGEISQYSM STIARTMPNS KYLKAAQQLL DEVVNVRKAL KRPNNDRNQS 240 SHEHETRSAK NGDTGTKNDS SMLTASGTSS NPQETGSNST CELSHAEKQD LQNKLTKLLY 300 MLDEVDRRYN QYYHQMQIVV SSFDVIAGCG ASKPYTALAL QTISRHFRCL RDAIAGQVRA 360 TRKSLGEHEN SGSDKGVGIT RLRYVDQQLR QQRALQQLGM IQQHAWRPQR GLPENSVSIL 420 RAWLFEHFLH PYPKDSDKIM LARQTGLTRS QVSNWFINAR VRLWKPMVEE MYKEEIGSVD 480 MDSISSSENA GKATKGDNKT FDDDKEEDLQ QSASSTATER CSAGDIIDLK SDQVSNLGNS 540 CSNRVASFQN GAHIEARNEL AKPNDELRPN VNNSSFFPDA IVHSQGESDR FMAAAAAYHM 600 SELGRFGTVG GVSLTLGLQH CEGGGLPLPA GTHHGFAAMR GDDMYNAAAS SLGETVHFEC 660 VNSGNPQPRF GPSHLYHDFV V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 412 | 469 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 412 | 469 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 3e-16 | 412 | 470 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-16 | 412 | 470 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681912 | 0.0 | LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011649247.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
Refseq | XP_011649248.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A0A0LPC4 | 0.0 | A0A0A0LPC4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004173415.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-118 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.109320.1 |
Entrez Gene | 101205137 |
Publications ? help Back to Top | |||
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