PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.108710.1 | ||||||||
Common Name | Csa_3G196420, LOC101205963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 270aa MW: 29584.2 Da PI: 4.7797 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cucsa.108710.1 112 FSCNYCQRKFFSSQALGGHQNAH 134 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.05E-6 | 110 | 139 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKPFLDLEKE PSCLANDSDI SSQVASSNYI SPLHENSNDN SLITNSSFFA NPNIPAADQP 60 GFESVCLDLT LNFNIEDIET RPDSTGFSLS TTSDQSSNEP TACATMAVPR VFSCNYCQRK 120 FFSSQALGGH QNAHKRERTL AKRAMRMGIL AERYASLASL PLKGSSFKSL GIKAHSSLLH 180 GIAAPMKPNE IRSSARFEPE PGYIGMPIFL EDDETEVMWP GSFRPMVETR NTDELTRPSF 240 ILTGISSISS ADKTWEDVEN STLDLTLKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 0.0 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140816.1 | 0.0 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 1e-38 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A0A0LBR9 | 0.0 | A0A0A0LBR9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140816.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 6e-41 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.108710.1 |
Entrez Gene | 101205963 |