PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 356aa MW: 39577.5 Da PI: 5.4078

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.107310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.7	2.7e-29	131	191	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ g+++prsYYrCt++ +C++ k+v+rs+edp+v+eitY+g+H+++ Cucsa.107310.1 131 EDGYSWRKYGQKDILGATYPRSYYRCTFRntqNCWAVKQVQRSDEDPSVFEITYRGKHTCS 191 8************************998889************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-28	122	192	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-25	129	192	IPR003657	WRKY domain
SMART	SM00774	7.2E-40	130	192	IPR003657	WRKY domain
PROSITE profile	PS50811	22.033	131	188	IPR003657	WRKY domain
Pfam	PF03106	4.2E-26	131	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MESGWSWDQK SLIGELIQGM ELTKQLRAEL GSASGEESKG SLVQGILSSY EKALLILKWN 60 GPMNQLQMVE ATPGLPSSPI SVNGSPSSDD SGRVLKDPQD SRKESKKRKT QPRWTEQVKV 120 NSETGFEGPH EDGYSWRKYG QKDILGATYP RSYYRCTFRN TQNCWAVKQV QRSDEDPSVF 180 EITYRGKHTC SQGNYLAQTC HSPDKQEQKE TDGDHHELQP LQENLFGNQT IQNIEKLENK 240 ASTFCFGSSS TSVGCKDIVN AGFSSLAIDT HSALGTFPQS FTSPTSPDKN YFTPSPCQRS 300 NVGGTHSVQN LDPDVHEIFS ANTSATNSPI LDWDFPFDSD HINPNFPFNS QGFFY*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MESGWSWDQK SLIGELIQGM ELTKQLRAEL GSASGEESKG SLVQGILSSY EKALLILKWN  60
GPMNQLQMVE ATPGLPSSPI SVNGSPSSDD SGRVLKDPQD SRKESKKRKT QPRWTEQVKV  120
NSETGFEGPH EDGYSWRKYG QKDILGATYP RSYYRCTFRN TQNCWAVKQV QRSDEDPSVF  180
EITYRGKHTC SQGNYLAQTC HSPDKQEQKE TDGDHHELQP LQENLFGNQT IQNIEKLENK  240
ASTFCFGSSS TSVGCKDIVN AGFSSLAIDT HSALGTFPQS FTSPTSPDKN YFTPSPCQRS  300
NVGGTHSVQN LDPDVHEIFS ANTSATNSPI LDWDFPFDSD HINPNFPFNS QGFFY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	4e-17	131	190	9	68	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149751.1	0.0	PREDICTED: probable WRKY transcription factor 41
TrEMBL	A0A0A0KUV6	0.0	A0A0A0KUV6_CUCSA; Uncharacterized protein
STRING	XP_004149751.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF493	34	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	3e-59	WRKY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.107310.1
Entrez Gene	101204004

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]