PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 270aa MW: 30306.7 Da PI: 6.6269

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.106960.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8e-31	139	197	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D + WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers +dp+v+++tY+ eHnh Cucsa.106960.1 139 SDSWGWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSLSDPEVFIVTYTAEHNHA 197 79***********************998**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-31	124	199	IPR003657	WRKY domain
PROSITE profile	PS50811	32.363	133	199	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-26	136	199	IPR003657	WRKY domain
SMART	SM00774	1.7E-35	138	198	IPR003657	WRKY domain
Pfam	PF03106	3.8E-26	140	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEDWGLQAIV KGCNGIPIGS STTAATTRLM EDSNWYSFLR SDQEEDEFFS SCVYNSSYNN 60 PQISSSSIFH DEFEGLFGRN SSNNSAAASI SHLLRDFKEP ADQKLHHKNQ IIQPTKQKQS 120 KKSRQNRVVK EVKADKVCSD SWGWRKYGQK PIKGSPYPRS YYRCSSSKGC SARKQVERSL 180 SDPEVFIVTY TAEHNHAEPT RRNALAGTTR KKFPALENPN LDMILSPNNS TSVASIEEDQ 240 HPMEGVTDGE VLIDMPFEFF TGLEDLLFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-18	140	199	19	77	Probable WRKY transcription factor 4
2ayd_A	1e-18	137	199	13	74	WRKY transcription factor 1
2lex_A	2e-18	140	199	19	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984025	0.0	GU984025.1 Cucumis sativus WRKY protein (WRKY26) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001267532.1	0.0	WRKY transcription factor 22-like
TrEMBL	E7CEX4	0.0	E7CEX4_CUCSA; WRKY protein
STRING	XP_004146534.1	0.0	(Cucumis sativus)
STRING	XP_004173708.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6217	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	4e-31	WRKY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.106960.1
Entrez Gene	101213208

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Ling J, et al. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics, 2011. 12: p. 471 [PMID:21955985] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]