PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.106510.1 | ||||||||
Common Name | Csa_4G046670, LOC101218004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 243aa MW: 26863.1 Da PI: 8.8794 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.9 | 1.9e-31 | 52 | 106 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY +ClkNhA+++Ggh++DGCgEfmps ge+gt++++kCaAC+CHR+FHRr ee Cucsa.106510.1 52 LRYSQCLKNHAVKTGGHVLDGCGEFMPS-GEDGTPDSFKCAACECHRSFHRRVLEE 106 69*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-17 | 52 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.7E-28 | 53 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-28 | 53 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.433 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.1E-15 | 163 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-26 | 164 | 232 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.6E-27 | 175 | 232 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEFKNQQTTS SSHHHLPFQY SLRPRTDPPP PPPPPPPLNL DPAPASPTST PLRYSQCLKN 60 HAVKTGGHVL DGCGEFMPSG EDGTPDSFKC AACECHRSFH RRVLEEEDIT NNTRLHILTS 120 APPQYNTQFS NGNNNNKQYP GRTRVAPMMM TFGGSTEAPA ESSSDGGAEA SGKQKKRCRT 180 KFSGEQKGKM MELANKIGWK IQKADEEEVL KFCNEIGVKR QNFKVWMHNN KQLPPTNNNS 240 SG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-18 | 175 | 237 | 17 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 1e-137 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 1e-137 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146554.2 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A0A0KWP2 | 1e-180 | A0A0A0KWP2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004168867.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24706 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-49 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.106510.1 |
Entrez Gene | 101218004 |
Publications ? help Back to Top | |||
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