PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106490.1
Common NameCsa_4G046650, LOC101217763
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 256aa    MW: 27057.6 Da    PI: 9.1212
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20131165135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Cucsa.106490.1 131 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 165
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89125161IPR000679Zinc finger, GATA-type
SMARTSM004014.0E-20125177IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14128175No hitNo description
Gene3DG3DSA:3.30.50.103.9E-17129165IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.34E-14130162No hitNo description
PROSITE patternPS003440131156IPR000679Zinc finger, GATA-type
PfamPF003205.9E-18131165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMHHYGGGGG GSASSFSVFL SVPNHGAADM YSSSTNYASS SSSPSSVDCT LSLGTPSTRS  60
SEFDGDKRAA AAAARNHHRR SAGSYVSNFC WDLLHPKHKT SGRGGGGGGA SNNNINAAVS  120
NGGDPLLARR CANCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRAAAA TVNSSVAESN  180
HHHHHHHHPM FNGSYTNSNT WVPQQLPATT QKHPCLSAAI GNEDVGPENG ISFLSWRLNV  240
ANTDHRPTLV HDFTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-134LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-134LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146553.20.0PREDICTED: GATA transcription factor 18-like
TrEMBLA0A0A0KY150.0A0A0A0KY15_CUCSA; Uncharacterized protein
STRINGXP_004146553.11e-166(Cucumis sativus)
STRINGXP_004171538.11e-166(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.17e-36GATA family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]