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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.106090.1 |
| Common Name | Csa_7G431330, LOC101206499 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
AP2 |
| Protein Properties |
Length: 375aa MW: 41850 Da PI: 6.6455 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.106090.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 36.8 | 9.6e-12 | 68 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n ++k+ + g ++ ++ Aa a++ a++k++g
Cucsa.106090.1 68 SVYRGVTRHRWTGRFEAHLWDkNCWNEgQNKKGRQGAYDDEDAAAHAYDLAALKYWG 124
78*******************99997778888888*****99*************98 PP
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| 2 | AP2 | 51.6 | 2.4e-16 | 167 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a+++a+ +++g
Cucsa.106090.1 167 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDKAAIEYRG 218
89****99**********99966...3.6*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 375 aa
Download sequence Send
to blast |
LSSPPSLLLL MAKISNPSHN NSISTTTDHD PHSSSSSSSS SILHSQRKVL TKRTRKSTPR 60
DSPAQRSSVY RGVTRHRWTG RFEAHLWDKN CWNEGQNKKG RQGAYDDEDA AAHAYDLAAL 120
KYWGTETVLN FPLLTYQDEL KEMEGQSREE YIGYLRRKSS GFSRGVSKYR GVARHHHNGR 180
WEARIGRVFG NKYLYLGTYA TQEEAATAYD KAAIEYRGLN AVTNFDLSRY IKCLRPGEQD 240
IPNTNRPPNP NAGETPSEFD PNSLLGFTFP SQCSSSGQPS IEPLPEVGDG DCSSSSTAIQ 300
LLLHSSKFKD IIERTSTAET PSESDRPRRC FPDDIQTYFD CTQDSGDFAE GDDSIFGYLN 360
SFLPSSVFHC ELDA*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402]
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