 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.105330.1 |
| Common Name | Csa_7G432650, LOC101222692 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
TALE |
| Protein Properties |
Length: 549aa MW: 61287.8 Da PI: 5.9778 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.105330.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.9 | 9.7e-10 | 368 | 405 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
Fe ++yp+ +e+ +LA+++gLt +qV +WF N R +
Cucsa.105330.1 368 FEHflHPYPKDSEKLKLARQTGLTRNQVANWFINARVR 405
664459******************************88 PP
|
| 2 | BELL | 96.6 | 2.1e-31 | 232 | 303 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
erq+l++k +kLlsll eVd+rYkqy++qlq+++ssF++vag g+a+ Ytsl ++iS hFr L+dai qi
Cucsa.105330.1 232 ERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQMLASSFDMVAGRGAAEFYTSLPHQTISCHFRRLQDAINAQI 303
799******************************************************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 549 aa
Download sequence Send
to blast |
MTYFPGLSNQ RDSMLGDHKL GSSCQEQQPL CSGNLMMFMN QDPSCRDYSE ILSGVSSNYV 60
ETVGDRSNVE MAFIPPVVGI LDESNFQCQG VSLSLSTHSP SVVSMSSFPH QYQTPAMVSS 120
FINAPPSILE KRQNPKPCIS DVKNGMYVAL GSGYSMLNSV YIEAAQQLLD EMVSIREALK 180
ELKSKKLKAS NGLGVDSCRE NDGGSNDLTG EMCGNAREAS IANPLSDLSP SERQDLKNKN 240
SKLLSLLGEV DRRYKQYYQQ LQMLASSFDM VAGRGAAEFY TSLPHQTISC HFRRLQDAIN 300
AQIEVTRRAL GEQDSLHSGQ EGIPRLRFVD QHLRQQRALQ HLGVTPHSWR PQRGLPESSV 360
SILRAWLFEH FLHPYPKDSE KLKLARQTGL TRNQVANWFI NARVRLWKPM VEEMYKEEFG 420
DSNIDIKSSP ENASKASWNN SLFSEDRGGD ELHDSTKSVA NNGERVLYRQ CATDDMINSS 480
NFTMGGGDVS LALELKHCEG DEFGMFGNNN NRMVGSVELE GQDFPCLEPE RHHQCRLTSS 540
NMLHDFVV*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444]
|
